Solanum lycopersicum mRNA Solyc07g039550.2.1

mRNA details  
Name
Solyc07g039550.2.1
Type
mRNA
Length
3,846
Organism
Solanum lycopersicum
Description
ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal
Location(s)
SL2.50ch07:47715963..47720015
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0004386
  • GO:0008026
  • GO:0005524
  • GO:0003723
Length
4053
Nb exon
2
Sifter term
GO:0004004
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc07g039550.2.1 ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal

CACGAGAGAGATTAGATGTAGTAGGAAAAAAAACAGAGGAAAATACGAAATCCCTTGGATTAGCAAGAGCTAAGAGCTAAGAGCTATTCGAAATCGTTTGAAGAATGGGAGCCGACAGTGAAGAAAATGAATTGAAGAAATTGGAATACCTATCTTTAATTTCTAAGGTATGTTCTGAATTGGAAGCACATTTAGGGTTTGGTGATAAAGTTTTAGCTGAATTTATAACTGAACTTGGTAGAAATTGCTCAACAGTTGATGAATTTGATGCCAAATTGAAAGAAAGTGGTGCTGAAATGCCTGATTATTTTGTTAGAACATTGCTAACTATAATACATGCTATTTTGCCTCCTAAACTCACGTCTAAGTCGGATAAGGATTTGAATAAGGATAATAATGATTCTGAGTTTTCCGCTCTCAAGATAAGAGATAATAGAGAACGAGTTAAGGAATTGGAAAAGGAGATTGAGCTGGAAGCCAAGACTAAGAGGAGAGATGGGGAGGAAGAAGAACGCGGTAGTAGGCGAGAGAGGGATAGAGATTATAGAAGAGAAAGGGGTCGAGACAAGGATAGAGGTAGGGACCGACATAGGAATGATTATGATGATGGTAGAGCTGAATGTAGGACTTCAGAAAGGCACAGAGACAGGGACAGGGACAGGGTTAGAGACAGGGACATGGTTAGAGACAGGGACAGGACTAATGATGATGATGCATATGCAAAAGGTAGGAGAGATGAATATGAACAAGAAAGCGATGATGATCGGAGGGATATGAGAAAATTGAGGCATCACATGGATGAGCCAGAGTTGTATGCAGTATATAAGGGGAGGGTATCAAGGGTGATGGATTCTGGTTGTTTTGTTCAGCTGAGTGATTTTAGAGGGAAAGAAGGCTTGGTGCATGTTTCACAACTTGCTACTAGAAGGGTCACTAATGCCAAAGATTTAGTAAAGCGGGACCAGGAGGTTTTTGTGAAGGTTATATCTATTAGTGGGCAGAAGCTGAGTTTGTCAATGAGGGATGTTGATCAGAATACAGGAAAGGATCTGTTGCCATTGAAAAAGAGCTTAGGCGACGATCAATTGACAACTCATCCTTCAACCATGAATGGTGAAGGTTCTAAGACCAGGATTGGTCTGTCAGGAATCAGAATTACGGAGCAGGAGGATGTAATTCCATCACGTAGACCGCTGAAGAGGATGAGTTCACCTGAAAAGTGGGAAGCGAAACAACTTATTGCTGCAGGTGTTTTGGGGGTGCAGGAACATCCCATGTTTGATGAAGAAGGGGACGGAATGCTCTATCAGGAAGAAGGTGCTGAAGAAGAGCTTGAGGTTGAGTTGAACGAAGATGAACCCCCTTTCTTGCAAGGGCAGAGTCGTTATTCAGTTGATATGTCCCCTGTTAAAATTTTTAAAAATCCTGAAGGATCATTGAGTCGTGCTGCTGCACTACAATCAGCTCTGATAAAGGAGAGAAGGGAAGTAAGGGAGCAGCAACAGAGAACGATGCTTGATTCCATCCCTAAAGATCTCAACAGACCCTGGGAAGACCCAATGCCAGAGACAGGTGAGAGGCATCTAGCACAGGAGCTTAGGGGTGTTGGTTTGTCTGCCTATGACATGCCAGAATGGAAGAAGGATGCTTATGGTAAAGCCTTGACCTTTGGCCAGAGGTCTAAGCTATCCCTCCAGGAGCAGAGGCAGAGTCTTCCTATTTACAAACTGAAGAAAGAACTGGTTCAGGCTGTCCATGATAACCAGGTCCTGGTTGTCATTGGTGAGACAGGTTCCGGTAAGACAACACAGGTGACACAGTATCTCGCCGAGGCAGGGTATACAACGAAGGGAAAAATTGGCTGTACTCAACCTCGTCGAGTGGCTGCAATGTCAGTGGCTAAGAGAGTTGCTGAGGAGTTTGGTTGTCGATTAGGTGAAGAGGTTGGTTATGCTATTCGTTTTGAAGATTGTACTGGGCCAGAAACTGTTATCAAATATATGACTGATGGTATGCTTCTGAGGGAGATCCTGATTGATGATAACTTATCCCAGTATTCAGTCGTAATGCTTGATGAAGCACACGAAAGAACAATTCACACTGATGTTCTCTTTGGTTTGCTTAAGCAGCTTATGAAGAGGAGACCTGACCTTCGTCTAATTGTCACTTCTGCAACTTTGGATGCAGAGAAATTTTCTGGTTATTTCTTCGACTGCAACATCTTTACAATCCCAGGAAGAACTTTTCCAGTAGAGATACTCTACACAAAGCAGCCAGAAAGTGATTACCTTGATGCGGCTTTAATTACTGTTATGCAGATCCACTTGACGGAACCTGAAGGTGATATCCTCCTCTTCTTGACTGGTCAAGAGGAGATTGATTATGCTTGCCAGTGTCTGTATGAGAGGATGAAAGGACTAGGTAAAAATGTTCCTGAACTGATCATACTGCCTGTCTATAGTGCCTTGCCCAGTGAAATGCAGTCCAGAATTTTTGATCCTGCCCCTCCTGGGAAGAGAAAAGTTGTTGTTGCTACAAATATTGCTGAAGCTTCTTTGACAATTGACGGTATATATTATGTTATTGATCCTGGATTCGCAAAGCAAAATGTCTACAATCCAAAACAGGGGCTTGATTCACTGGTTATTACCCCAATTTCACAAGCATCAGCAAAGCAGCGAGCAGGACGTGCTGGACGAACTGGACCCGGGAAGTGCTACCGTCTGTATACTGAGAGCGCTTTCCACAGTGAAATGTCCCCTACCGCAATTCCAGAAATCCAGAGGATAAATCTTGGGAACACTGTTCTTATGATGAAAGCAATGGGTATTAATGATCTTTTGTCGTTTGATTTCATGGACCCACCTTCCCCTCAGGCTCTCATATCTGCCATGGAGCAACTTTATACTCTTGGAGCATTGGATGAAGAGGGGCTTCTGACGAAACTGGGAAGAAAAATGGCAGAATTTCCCTTAGATCCTCCTTTGTCCAAGATGCTTCTTGCTAGCGTGGACCTTGGCTGTAGCGATGAGATCTTGACCATAATTGCTATGATTCAAACTGGAAATATCTTTTACCGACCAAGAGAAAAACAAGCTCAGGCCGATCAGAAAAGGGCCAAATTTTTTCAACCTGAGGGTGATCATCTTACCTTGCTTGCTGTTTATGAGGCTTGGAAAGCGAAAAACTTTTCAGGTCCATGGTGTTTTGAAAATTTTGTCCAGTCACGATCACTTAGGAGGGCACAGGATGTTAGAAAACAGCTGCTCTCCATCATGGATAAGTATAAATTGGATGTTGTAAGTGCTGGAAAGAATTTTACAAAGATCCGGAAGGCTATTGGAGCAGGTTTCTTTTTTCATGCTGCTAGAAAGGATCCTCAAGAGGGTTATAGAACTCTAGTTGAGAACCAGCCAGTTTACATCCATCCTAGCAGTGCTCTTTTTCAAAGACAGCCGGACTGGGTTATTTATCACGAGCTTGTTATGACAACAAAGGAGTACATGCGCGAGGTAACCGTGGTAGATCCTAAATGGCTTGTTGAGCTGGCACCAAGATTCTTCAAGGTGTCTGACCCAACAAAATTAAGCAAGCGCAAGAGACAGGAACGTATTGAACCTCTTTACGATAGATATCATGAGCCAAACTCTTGGAGATTGAGTAAACGGCGAGCGTGATATCTCTTTTTTTTCTTGGTTGTGTTGGTTCATTGAAATGCGCACCGTTTGTTTCTGTAAGAGTGACATATATTTGGTCAATTTTAAACATAATTTTTGACATTTGGAGCACTTCATTTGTACAAGCCTTTTTGCCATTTGAGCTAATTATAGTTTTCAGTGAAGTTCC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc07g039550.2.1SL2.50ch07:47716131..477199111,191-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc07g039550.2SL2.50ch07:47715963..477200154,053-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc07g039550.2.1.1SL2.50ch07:47716733..477200153,283-1
exonexon:Solyc07g039550.2.1.2SL2.50ch07:47715963..47716525563-n/a
intronintron:Solyc07g039550.2.1.2SL2.50ch07:47716526..47716732n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17875823%2Fdetails feature 17875823
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