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Solanum lycopersicum mRNA Solyc07g042260.2.1

mRNA details  
Name
Solyc07g042260.2.1
Type
mRNA
Length
3,767
Organism
Solanum lycopersicum
Description
Auxin response factor 1 (AHRD V1 *-*- Q6L8U3_CUCSA); contains Interpro domain(s) IPR010525 Auxin response factor
Location(s)
SL2.50ch07:55363905..55371264
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0006355
  • GO:0046983
Length
7360
Nb exon
13
Sifter term
GO:0046983
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc07g042260.2.1 Auxin response factor 1 (AHRD V1 *-*- Q6L8U3_CUCSA); contains Interpro domain(s) IPR010525 Auxin response factor

AGAAAGTGAAAAGCTTTTTGAACTGGAATTAGGTGAAAGTAGCTTTGTGTTGGACAAATTCTTCTTTGTTACTTTTGGGAGAGAAGTAATTCAACTTAAGTGGATTTTTTGCTGAAATGAAAGCGCCATCAAACGGATATCTACCAAATTCAGGAGAAGGAGAAAGAAAGCTCATGAATTCAGAGTTATGGCACGCTTGTGCTGGCCCATTGGTTTCTTTGCCTCCTGTTGGAAGCCTTGTGGTATATTTTCCTCAAGGTCACAGTGAGCAGGTGGCTGCATCAATGCAAAAGGAGACAGATGGAATTCCAAGTTATCCTAATCTTCCTTCCAAGTTGATCTGCATGTTACACAATGTTACTCTACATGCTGACACTGAAACTGATGAGGTCTATGCTCAGATGACTCTTCAACCTGTCAACAAATATGACCAGGAGGCTTTACTTTTATCTGAAATGGGCCTTAAGCAGAACAGGCAACCTGCTGAGTTCTTCTGTAAAACTCTCACTGCTAGTGATACAAGCACACATGGTGGATTTTCTGTTCCTCGTCGAGCAGCAGAGAAGATATTTCCTCCTCTGGACTATGCAATGCAACCTCCTGCTCAGGAGCTAATGGCTAGAGATTTGCATGACCAAACATGGACTTTCAGGCATATTTATCGAGGTCAACCAAAAAGACACCTTTTGACTACCGGTTGGAGTGTCTTTATCTCCTCTAAGAGGCTTTGTGCCGGCGATTCTGTCCTTTTCATAAGAGATGAAAAGTCACAGCTTCTCTTGGGTATAAAACGAACAAATAGACAGCAGCCCGCCCTATCCTCATCTGTTATATCTAGTGACAGCATGCACATTGGGATCCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCGTTTACTATCTTTTACAACCCTAGGGCTAGCCCTTCTGAATTTGTAATTCCTCTGGCCAAGTATAATAAAGCTATGTATGCACAAGTTTCACTAGGAATGCGATTTCGGATGATGTTTGAAACAGAGGAGTCTGGAGTTCGCAGATACATGGGTACAATAACAGGTGTTAGTGATCTGGACCCCATACGATGGAAGAGCTCACAGTGGCGTAATCTTCAGGTAGGATGGGATGAATCAACTGCCGGAGAACGTCCAAGCAGAGTTTCAATTTGGGATATTGAGCCTGTCGTGACTCCTTTTTATATCTGTCCACCACCATTTTTCAGGCCCAAGTTTCCTAAGCAGCCAAGTTTTCCTGGTGATGAGTCTGATATTGAAAATGTTTTAAAGAGGGGGATGCCCTGGATCAATGATGAGTTAGGTCTAAAAGATGCTCAAAATTCGATATTCCCTGGACTGAGCTTGGTCCAATGGATGAGTATGCAACAGAACAATCATGTGCCAGTTGCCCAATCTGGACTTCCCAGTGTCTTACACAGTAACATCGGCAGTGATGACCATTCCAAGTTGTTGAACTTTCAGTCACCTGCATTAGCTACACCGGGTCTCCAGTTCAACAAACCAAATCAACTAAACCAGCCATTTGGTCAAATCCAACAGCCACCATTAGCATGGACTCAAGAGCAACAGCAATCGTTACAGTCTCCTGTAAGTGCACAACAGCAACAGCAACAGCAACACACGCTGCAGCAACAGCAACAGCAACAACAACACACATTACAGCAGCAGCAACAACAACGACACACATTGCAGCAGCAACAACAACAACAAACACTGCAGCAGCAGCAGCAGCAACAGCAACAGCAACACACACTGCAGCAGCAGCAACAGCAACAACACACACTGCAGCATCAGCAGCAGCACACGCTGCAACAGCCACAGCAACACATGTTGCAGCAACAGCCACAGTTTCATCAACAAGCACAACAGCAGCTGCAGCAACAACAGCGTCCATCCCAGCAGCAACAATTGACCGGGAATTCATCACCAGTAAATCGTTGTGTATCCCCTAACCAGATACCAAACCAAACTTTTCCACAAGCTGCGGTATATGGTCAGCTTCAGCAACAACAGGTGCTATCAGCTAGTACCCAATCACAGCAAAATGTTCCTGTCAGTAGAAATTCATTCCCTTCGACATCCTTGGCACAGGACTTCCAATTTCAGCAACAAATGGAACAGCAATCTAACCTCTTGCAGAAATCCCAGCAACAGCAGACAATACCACAACAAGCTCCTCTACAATTGTTGCAGCAAAGTTTGATGCAGAGGTCCCAAGTGCAACCATCATCACAGCAGAGCCTTACAGAACAGCAGCTGCAACTACAACTTCTTAATAAACTGCAGCAGCAACAACAACAGCAACAAGCACAGCTATTATCTCCCGTAAGCTCTACTCTGGAGCCGCGTATGCCCCAGCAACAACAGAACCGGCAACCACAAGAGCTCCAGTTTGCTCATCAACAGTTGAGTTCCAACATCGTGACCACCGTGACACATCTCCAGTCAACCCATCATGCTTTCAACCAACTCCAAAACCATCACAAATCCCCTATAACAATCAAAGCACTTTCTGGTGGTACAGAAGGAGATGCTCCTTCATGTTCAACCTCTCCTTCTACGAATAATTTCCAAGTTTCACCACCAAACTTCTTGACCAGGAACCAAGGGCAAGCGATACTGGTGGATGAATCTGTTGTCGATCCTTCTCAAGAGCAAAACAAATCCGAATGTCGAATAAAACATGAACTAGTGTTCTCAAAAGGTTCAGAGCTGTCTAAGTACAAAGGCAATAATACTGAGAACTTAGAGGCAGCCTCATCGACAACATCGTATGGGCTGGATTCTAGTGGCTTCAACTTTTCATTGCCTGCATTATGTGTGGATGGTGATGTTCAATCGCATTCTAGGAACATTCTACCTTCTGCAGCAAATAATATAGATGGACTGAACCCTGATGCTTTGCTATCAAGGGATTATGATTCTGGAAAGGATATACAAAACCTATTCTCTCCTTTTGGCAATGCCCCTAGGGATATAGAAACTGAGCTGTCTGATGCTGGGATCAATTCTCAACAATTTGGGGTGCCAAACATGTCATACAAGCCAAGATGTGCCAACGATCTTGCTGTCAATGACAACGGTATTCTGAACAATAATGCATGGACGAACCAGACTCAGCGCATGAGAACGTATACAAAGGTTCAAAAACGAGGCTCTGTGGGAAGAACTATAGACGTTACTCGCTACATAGGCTATGATGAACTAAGGCATGATCTAGCACGTATGTTTGGAATTGAGGGACAGCTTGAAGATCCTCAAAGAACTGAGTGGAAGCTTGTGTATGTTGACCATGAGAATGATATACTGCTTGTTGGTGACGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATCAAAATCTTGTCTTGCGCTGAAGTGCAGCAGATGAGCTTGAATGGGGATTTGGGTAATGTGCCAGTACCAAACCAAGCTAGCAGTGGAACTGACAGTGGTAATGCGTGGAAAGGACACTACGATGACAACTCAGCTGCATCATTTAATTGATGAAGGTGCTCCAATTAAATGAACTAAACCTTGCAATACATAGTCATGGAGGCTGCAAACGACTAAATCTGCTGATTCTCACTGGAGGCAACTGAGGTAGTAGAACATTACTTTCTAGGCAACAGGTGGGAGCAACTCATGGCGTGTTTTGGCGTAAATTCATGGCAGGGTTGATATTAGATTAGTTTGATTGCCACTTTATTGTGAGGTCCAAAGCAGTTATAAATTTATTAATTA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc07g042260.2.1SL2.50ch07:55364141..553711481,138-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc07g042260.2SL2.50ch07:55363905..553712647,360-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc07g042260.2.1.1SL2.50ch07:55371106..55371264159-2
exonexon:Solyc07g042260.2.1.10SL2.50ch07:55366953..55367091139-2
exonexon:Solyc07g042260.2.1.11SL2.50ch07:55364720..553666231,904-n/a
exonexon:Solyc07g042260.2.1.12SL2.50ch07:55364392..55364582191-1
exonexon:Solyc07g042260.2.1.13SL2.50ch07:55363905..55364319415-n/a
exonexon:Solyc07g042260.2.1.2SL2.50ch07:55369490..55369602113-n/a
exonexon:Solyc07g042260.2.1.3SL2.50ch07:55369305..5536940096-n/a
exonexon:Solyc07g042260.2.1.4SL2.50ch07:55368935..5536899157-n/a
exonexon:Solyc07g042260.2.1.5SL2.50ch07:55368675..55368830156-n/a
exonexon:Solyc07g042260.2.1.6SL2.50ch07:55368517..5536860185-2
exonexon:Solyc07g042260.2.1.7SL2.50ch07:55367932..5536802291-1
exonexon:Solyc07g042260.2.1.8SL2.50ch07:55367688..55367852165-1
exonexon:Solyc07g042260.2.1.9SL2.50ch07:55367326..55367521196-n/a
intronintron:Solyc07g042260.2.1.10SL2.50ch07:55367092..55367325n/a-n/a
intronintron:Solyc07g042260.2.1.11SL2.50ch07:55366624..55366952n/a-n/a
intronintron:Solyc07g042260.2.1.12SL2.50ch07:55364583..55364719n/a-n/a
intronintron:Solyc07g042260.2.1.13SL2.50ch07:55364320..55364391n/a-n/a
intronintron:Solyc07g042260.2.1.2SL2.50ch07:55369603..55371105n/a-n/a
intronintron:Solyc07g042260.2.1.3SL2.50ch07:55369401..55369489n/a-n/a
intronintron:Solyc07g042260.2.1.4SL2.50ch07:55368992..55369304n/a-n/a
intronintron:Solyc07g042260.2.1.5SL2.50ch07:55368831..55368934n/a-n/a
intronintron:Solyc07g042260.2.1.6SL2.50ch07:55368602..55368674n/a-n/a
intronintron:Solyc07g042260.2.1.7SL2.50ch07:55368023..55368516n/a-n/a
intronintron:Solyc07g042260.2.1.8SL2.50ch07:55367853..55367931n/a-n/a
intronintron:Solyc07g042260.2.1.9SL2.50ch07:55367522..55367687n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17877406%2Fdetails feature 17877406
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