Solanum lycopersicum mRNA Solyc07g049500.2.1
 mRNA details
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| Name | Type |
Length
3,098
|
Organism |
|
Description
Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi
|
|
Location(s)
SL2.50ch07:59770033..59780622
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0003676
- Length
- 10590
- Nb exon
- 22
- Sifter term
- GO:0035197
- GO:0019899
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc07g049500.2.1 Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi
GCTGTGTTCACATGATGTATCATAGGGGGTATAGAAAGGACTCTGATTTCAGTAGCCTTCATCTTTTGATGTTTTTTTGGCTAACAACTTCTCCTAGGTCATTGTTCGGTTTGAAACATGGAAAATAGTGAGGGAAGAGAGAGTTGTTTCTCACCTGTGGAAGAACCGCCACCAGTTATAATGTCAAATGCAGAGCCAGAGAGAGTTGATCAGCCCAAGCGTACTATAATGATGAGGGCTGGGGATGGAACATCTGGACGAGAGATTTCTTTGCTTGCAAACCACCTAAAAGTTTCTATCAAGTGTCCTGATGAAATATTTTACCATTATAGTGTCTCTATAACTTCTGATGAAAAGAGGGCCGTTAACAGCAAGGTGATTAGAAGAAAAATTGTAGATAAACTTCACGAAACATACTCATCTGAATTTGCTGGGAAGAAATTTGCTTATGATGGAGAGAAGAATTTGTACACAGTGGGACCTCTACCACGCAACAGACTGGAATTCACGGTGGTTGTTGAGGAGTCTAGTGCACGGCAGGCTAGTGAGAGCCCCTCAGATAATGGAAGCCTCAATCACTCCATTAAAAGGTTTAAGCATTCTCTTCATTCGAAGGCTTTCCTGGTGGAGATCGACTATGCAGCTAAAATACCATTAAGGTCTGTTGATCTTGCCCTTCAAGGAGCTGATCCAGAAAATGTTCAAGATGCATTGAGGGTTCTAGATATTATATTGCGACAAAAAGCTGCTAATAGAGGATGCCTCTTGGTTAGACAGTCATTTTTTCATGATGACTCAAGGAACTTCACAGATGTTGGAGGGGGTGTAATGAGTTGCAGGGGGTTACATTCCAGCTTTCGTCCAACTGATGGTGGCTTGACCTTGAACATGGATGTGTCTACAACTATGATCCTATCACCTGGACCTGTAATTGATTTTTTGCTTGCTAACCAGAATGTAAAAGAGCCTCGTTATATTGATTGGGCAAGAGCAAAAAGAATGTTGAAGAATATGAGAGTTAAAGCTAAGCATGACAACAGGGAATTTAAAATTATCGGTTTGACTGACAAACCTTGCAATCAACAGTTATTTTCTATGAAGGTCAAAAATGGTGGCAGTCCAGATGATGGAGGAGAGACCCTAGATATAACTGTTTATCAGTATTTCACTAAACATCGTAACATAGAACTTTCATCCTCAGTTTATATGCCATGTCTGGACGTTGGAAAACCAAAACGACCAAACTATCTGCCACTGGAGCTGTGTTATTTGGTCTCCCTTCAAAGATACACAAAGGCATTATCATCGGTCCAGAGGGCATCTTTAGTTGAAAAATCAAGGCAGAAGCCTCGTGAAAGAATTAAAGTTATAACAGATGCTGTGAGGGACTACAGCTATGACGATGATCCCCTTCTTGTTGCTTGTGGAATCTCAATAGAAAAGCAGTTGATTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAGTTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAGCATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATTCATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCGGTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAGAGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAGGGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAGGCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAGGTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATTGGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGTGTACCAAAGGAGTACCAGCGCGACCTCTATTGTGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTTTTAAATGCATATGCTGTAAATCCTTAGTAGTTTGGTAGTATAGTACCCGGCTCCAAATTTTGTCGAGGCCTTCGGTTAGTTAAGTGCTTTAAGGTCGTCTAACAAGGATCATGCTTCGAGTTTGTTTTATTTTTTTGACGTAATTAAGATAGAAATTTCACCATTTAAAGGGCATAGAATTTTGGGCGTTGCTCCATTTAGCTATTTTAGAAGTTGAACTGATTTTTGTATAGTCAAAGTTTGTCTAAGTTTGGC
GCTGTGTTCACATGATGTATCATAGGGGGTATAGAAAGGACTCTGATTTCAGTAGCCTTCATCTTTTGATGTTTTTTTGGCTAACAACTTCTCCTAGGTCATTGTTCGGTTTGAAACATGGAAAATAGTGAGGGAAGAGAGAGTTGTTTCTCACCTGTGGAAGAACCGCCACCAGTTATAATGTCAAATGCAGAGCCAGAGAGAGTTGATCAGCCCAAGCGTACTATAATGATGAGGGCTGGGGATGGAACATCTGGACGAGAGATTTCTTTGCTTGCAAACCACCTAAAAGTTTCTATCAAGTGTCCTGATGAAATATTTTACCATTATAGTGTCTCTATAACTTCTGATGAAAAGAGGGCCGTTAACAGCAAGGTGATTAGAAGAAAAATTGTAGATAAACTTCACGAAACATACTCATCTGAATTTGCTGGGAAGAAATTTGCTTATGATGGAGAGAAGAATTTGTACACAGTGGGACCTCTACCACGCAACAGACTGGAATTCACGGTGGTTGTTGAGGAGTCTAGTGCACGGCAGGCTAGTGAGAGCCCCTCAGATAATGGAAGCCTCAATCACTCCATTAAAAGGTTTAAGCATTCTCTTCATTCGAAGGCTTTCCTGGTGGAGATCGACTATGCAGCTAAAATACCATTAAGGTCTGTTGATCTTGCCCTTCAAGGAGCTGATCCAGAAAATGTTCAAGATGCATTGAGGGTTCTAGATATTATATTGCGACAAAAAGCTGCTAATAGAGGATGCCTCTTGGTTAGACAGTCATTTTTTCATGATGACTCAAGGAACTTCACAGATGTTGGAGGGGGTGTAATGAGTTGCAGGGGGTTACATTCCAGCTTTCGTCCAACTGATGGTGGCTTGACCTTGAACATGGATGTGTCTACAACTATGATCCTATCACCTGGACCTGTAATTGATTTTTTGCTTGCTAACCAGAATGTAAAAGAGCCTCGTTATATTGATTGGGCAAGAGCAAAAAGAATGTTGAAGAATATGAGAGTTAAAGCTAAGCATGACAACAGGGAATTTAAAATTATCGGTTTGACTGACAAACCTTGCAATCAACAGTTATTTTCTATGAAGGTCAAAAATGGTGGCAGTCCAGATGATGGAGGAGAGACCCTAGATATAACTGTTTATCAGTATTTCACTAAACATCGTAACATAGAACTTTCATCCTCAGTTTATATGCCATGTCTGGACGTTGGAAAACCAAAACGACCAAACTATCTGCCACTGGAGCTGTGTTATTTGGTCTCCCTTCAAAGATACACAAAGGCATTATCATCGGTCCAGAGGGCATCTTTAGTTGAAAAATCAAGGCAGAAGCCTCGTGAAAGAATTAAAGTTATAACAGATGCTGTGAGGGACTACAGCTATGACGATGATCCCCTTCTTGTTGCTTGTGGAATCTCAATAGAAAAGCAGTTGATTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAGTTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAGCATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATTCATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCGGTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAGAGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAGGGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAGGCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAGGTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATTGGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGTGTACCAAAGGAGTACCAGCGCGACCTCTATTGTGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTTTTAAATGCATATGCTGTAAATCCTTAGTAGTTTGGTAGTATAGTACCCGGCTCCAAATTTTGTCGAGGCCTTCGGTTAGTTAAGTGCTTTAAGGTCGTCTAACAAGGATCATGCTTCGAGTTTGTTTTATTTTTTTGACGTAATTAAGATAGAAATTTCACCATTTAAAGGGCATAGAATTTTGGGCGTTGCTCCATTTAGCTATTTTAGAAGTTGAACTGATTTTTGTATAGTCAAAGTTTGTCTAAGTTTGGC
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
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| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc07g049500.2.1 | SL2.50ch07:59770301..59780505 | 904 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc07g049500.2 | SL2.50ch07:59770033..59780622 | 10,590 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc07g049500.2.1.1 | SL2.50ch07:59780290..59780622 | 333 | - | n/a |
| exon | exon:Solyc07g049500.2.1.10 | SL2.50ch07:59778328..59778390 | 63 | - | n/a |
| exon | exon:Solyc07g049500.2.1.11 | SL2.50ch07:59777867..59777980 | 114 | - | n/a |
| exon | exon:Solyc07g049500.2.1.12 | SL2.50ch07:59777615..59777780 | 166 | - | 2 |
| exon | exon:Solyc07g049500.2.1.13 | SL2.50ch07:59777428..59777540 | 113 | - | n/a |
| exon | exon:Solyc07g049500.2.1.14 | SL2.50ch07:59777196..59777333 | 138 | - | n/a |
| exon | exon:Solyc07g049500.2.1.15 | SL2.50ch07:59776977..59777107 | 131 | - | 1 |
| exon | exon:Solyc07g049500.2.1.16 | SL2.50ch07:59776823..59776888 | 66 | - | 1 |
| exon | exon:Solyc07g049500.2.1.17 | SL2.50ch07:59771522..59771585 | 64 | - | n/a |
| exon | exon:Solyc07g049500.2.1.18 | SL2.50ch07:59771150..59771261 | 112 | - | 2 |
| exon | exon:Solyc07g049500.2.1.19 | SL2.50ch07:59770990..59771063 | 74 | - | n/a |
| exon | exon:Solyc07g049500.2.1.2 | SL2.50ch07:59779999..59780204 | 206 | - | 1 |
| exon | exon:Solyc07g049500.2.1.20 | SL2.50ch07:59770681..59770775 | 95 | - | 1 |
| exon | exon:Solyc07g049500.2.1.21 | SL2.50ch07:59770567..59770598 | 32 | - | 2 |
| exon | exon:Solyc07g049500.2.1.22 | SL2.50ch07:59770033..59770477 | 445 | - | n/a |
| exon | exon:Solyc07g049500.2.1.3 | SL2.50ch07:59779691..59779906 | 216 | - | 1 |
| exon | exon:Solyc07g049500.2.1.4 | SL2.50ch07:59779480..59779616 | 137 | - | 2 |
| exon | exon:Solyc07g049500.2.1.5 | SL2.50ch07:59779303..59779400 | 98 | - | n/a |
| exon | exon:Solyc07g049500.2.1.6 | SL2.50ch07:59779126..59779223 | 98 | - | 1 |
| exon | exon:Solyc07g049500.2.1.7 | SL2.50ch07:59778873..59779044 | 172 | - | n/a |
| exon | exon:Solyc07g049500.2.1.8 | SL2.50ch07:59778658..59778774 | 117 | - | n/a |
| exon | exon:Solyc07g049500.2.1.9 | SL2.50ch07:59778478..59778585 | 108 | - | n/a |
| intron | intron:Solyc07g049500.2.1.10 | SL2.50ch07:59778391..59778477 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.11 | SL2.50ch07:59777981..59778327 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.12 | SL2.50ch07:59777781..59777866 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.13 | SL2.50ch07:59777541..59777614 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.14 | SL2.50ch07:59777334..59777427 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.15 | SL2.50ch07:59777108..59777195 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.16 | SL2.50ch07:59776889..59776976 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.17 | SL2.50ch07:59771586..59776822 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.18 | SL2.50ch07:59771262..59771521 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.19 | SL2.50ch07:59771064..59771149 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.2 | SL2.50ch07:59780205..59780289 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.20 | SL2.50ch07:59770776..59770989 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.21 | SL2.50ch07:59770599..59770680 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.22 | SL2.50ch07:59770478..59770566 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.3 | SL2.50ch07:59779907..59779998 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.4 | SL2.50ch07:59779617..59779690 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.5 | SL2.50ch07:59779401..59779479 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.6 | SL2.50ch07:59779224..59779302 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.7 | SL2.50ch07:59779045..59779125 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.8 | SL2.50ch07:59778775..59778872 | n/a | - | n/a |
| intron | intron:Solyc07g049500.2.1.9 | SL2.50ch07:59778586..59778657 | n/a | - | n/a |
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