Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Solanum lycopersicum mRNA Solyc07g049720.2.1

mRNA details  
Name
Solyc07g049720.2.1
Type
mRNA
Length
3,048
Organism
Solanum lycopersicum
Description
DNA topoisomerase I (AHRD V1 **** Q9XGL1_DAUCA); contains Interpro domain(s) IPR013499 DNA topoisomerase I, C-terminal, eukaryotic-type
Location(s)
SL2.50ch07:60062710..60072674
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006265
  • GO:0003677
  • GO:0005694
Length
9965
Nb exon
16
Sifter term
GO:0003917
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc07g049720.2.1 DNA topoisomerase I (AHRD V1 **** Q9XGL1_DAUCA); contains Interpro domain(s) IPR013499 DNA topoisomerase I, C-terminal, eukaryotic-type

GAAATTGGAATGTCGATTTCTTCGGCCATTACCATTGAATGACCACCACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAGGTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAAGAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAGGTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAGATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAGGTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAATTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGAAGAAAAAAAAAGAGATCTTTGATCGTTGTCTGACAATATTTAAACTTGTTTACCCTGACAAATTCCTGTTGTAATTTGAGCTTCTGAATTTAT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc07g049720.2.1SL2.50ch07:60062943..60071538882-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc07g049720.2SL2.50ch07:60062710..600726749,965-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc07g049720.2.1.1SL2.50ch07:60072550..60072674125-n/a
exonexon:Solyc07g049720.2.1.10SL2.50ch07:60065726..6006581691-2
exonexon:Solyc07g049720.2.1.11SL2.50ch07:60065505..60065638134-n/a
exonexon:Solyc07g049720.2.1.12SL2.50ch07:60063853..6006392169-n/a
exonexon:Solyc07g049720.2.1.13SL2.50ch07:60063677..6006376690-n/a
exonexon:Solyc07g049720.2.1.14SL2.50ch07:60063381..60063484104-1
exonexon:Solyc07g049720.2.1.15SL2.50ch07:60063133..60063301169-n/a
exonexon:Solyc07g049720.2.1.16SL2.50ch07:60062710..60063012303-n/a
exonexon:Solyc07g049720.2.1.2SL2.50ch07:60070414..600715811,168-n/a
exonexon:Solyc07g049720.2.1.3SL2.50ch07:60070141..60070335195-n/a
exonexon:Solyc07g049720.2.1.4SL2.50ch07:60068751..6006883181-n/a
exonexon:Solyc07g049720.2.1.5SL2.50ch07:60067151..6006721060-n/a
exonexon:Solyc07g049720.2.1.6SL2.50ch07:60066924..6006701895-1
exonexon:Solyc07g049720.2.1.7SL2.50ch07:60066613..60066769157-n/a
exonexon:Solyc07g049720.2.1.8SL2.50ch07:60066400..60066525126-n/a
exonexon:Solyc07g049720.2.1.9SL2.50ch07:60065930..6006601081-n/a
intronintron:Solyc07g049720.2.1.10SL2.50ch07:60065817..60065929n/a-n/a
intronintron:Solyc07g049720.2.1.11SL2.50ch07:60065639..60065725n/a-n/a
intronintron:Solyc07g049720.2.1.12SL2.50ch07:60063922..60065504n/a-n/a
intronintron:Solyc07g049720.2.1.13SL2.50ch07:60063767..60063852n/a-n/a
intronintron:Solyc07g049720.2.1.14SL2.50ch07:60063485..60063676n/a-n/a
intronintron:Solyc07g049720.2.1.15SL2.50ch07:60063302..60063380n/a-n/a
intronintron:Solyc07g049720.2.1.16SL2.50ch07:60063013..60063132n/a-n/a
intronintron:Solyc07g049720.2.1.2SL2.50ch07:60071582..60072549n/a-n/a
intronintron:Solyc07g049720.2.1.3SL2.50ch07:60070336..60070413n/a-n/a
intronintron:Solyc07g049720.2.1.4SL2.50ch07:60068832..60070140n/a-n/a
intronintron:Solyc07g049720.2.1.5SL2.50ch07:60067211..60068750n/a-n/a
intronintron:Solyc07g049720.2.1.6SL2.50ch07:60067019..60067150n/a-n/a
intronintron:Solyc07g049720.2.1.7SL2.50ch07:60066770..60066923n/a-n/a
intronintron:Solyc07g049720.2.1.8SL2.50ch07:60066526..60066612n/a-n/a
intronintron:Solyc07g049720.2.1.9SL2.50ch07:60066011..60066399n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17880909%2Fdetails feature 17880909
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)