Solanum lycopersicum mRNA Solyc07g052110.2.1
 mRNA details
|
| Name | Type |
Length
2,405
|
Organism |
|
Description
Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-*- RSMF_KLEP7); contains Interpro domain(s) IPR011023 Nop2p
|
|
Location(s)
SL2.50ch07:60655311..60664510
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| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0006364
- Length
- 9200
- Nb exon
- 18
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc07g052110.2.1 Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-*- RSMF_KLEP7); contains Interpro domain(s) IPR011023 Nop2p
ATGGATTCAATTTACAAAATTAGTGCGACTTTAGTCCTTAACATCTCTCTCTTTACAGCTTCGCTTCTCTCTTCACTCAGCGCCCCCCTCTCTGCCCCTCTGATTCTCGCAGACAAGAGAAGAAGAAGAAGAGTTAATAAGCTTCTCACCATCTCTCCAACCGCAACTGCTCTCTCTCCGATGGCTGGTAAACTCGGTAAGAAAGTGGGTTCTAAATTAGGGAAACCACCAACCAAGAAGAAGCAGAAGAAGGAACCTTTGCCACCTAAGCCACTGGAAAAGGAGGATCTTTTTAGTGACAGTGAAGGAACTGATGGAGATTTTGAAGAAGATGGAGGTTCTGGTGATGAAGAACAACAGGAAATGAACTCGGATTCTGACATGTCTTCTGACTTGGATGACCCCTTTGCTGCTGATATATTAGCAAGCGGTGATGCTGACGATTGTTCCGATGTTCATTCCGATTCGGATGTAGATTCTGATTCAGATGCAGATGATACTGATCTTGTAAGGAAGTCAAAAGCTATTGATGATGAAAGGAAAAGAGAGGAGGAGGAGGGTGATTTAGAATTGCAGCTCAATATTAAAGAAGAAGCTGATGAGTTCAGATTGCCAACAACGGAGGAGCTCGAAGAAGAAACAAATAGACCCCCGGATCTCTCTAATCTCCAAAGGAGGATAAAAGAAATTGTTCGGGTGCTCTCAAATTTCAAGTCATTGAGGCAAGAAAATGTGACACGTAAGGATTACGTTGATCAACTTAAAAGGGACTTGGGTTCATATTATGGATACAATGATTTTCTCATTGAATCGTTAGTGGAGCTGTTTCCCCCTGTTGAGTTGATTGAACTTATTGAAGCATTTGAAAAGCCCCGGCCAATTTCTCTGCGGACAAACACTTTAAAGACTCGCAGACGGGATTTAGCAGGTGTTCTTCTTAACAGAGGTGTCAATTTGGATCCACTAAGCAAATGGTCAAAGGTTGGGCTAGTTGTATATGATTCTCAAGTTCCAGTTGGTGCCACTCCTGAGTATATGGCTGGTCACTACATGCTCCAAAGTGCGAGTTCGTTTCTGCCTGTAATGGCCCTTGCCCCTCAAGAGAATGAACGTATTGTTGATATGGCTGCTGCTCCTGGAGGCAAAACAACTTATGTTGCTGCACTGATGAAAAATAGTGGTATTATTTATGCAAATGAGATGAAGGAGTCGAGACTTAAATCACTCACTGCTAACTTACATCGCATGGGGGTAACAAACACCATTGTCTGTAACTATGATGGAAGAGAGCTACCTAAAGTCTTGGGTCAGAACACTGCCGATAGAATTTTGCTGGATGCTCCCTGCAGTGGCACTGGGGTGATTTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCTGCAGATATACAAAATTGCTCACACCTGCAGAAGGAACTGATACTTGCAGCAATTGACATGGTCGATGCCAACTCAAAATCGGGTGGATACATAGTGTATTCTACCTGCTCCATCATGGTTGATGAGAATGAAGCAGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAACTCGTGCCTTGTGGACTTGATTTTGGCAGGCCCGGATTTGTTCGCTTTAGGCAGCACCGTTTCCACACATCGTTGGACAAGACACGGCGATTCTATCCTCATGTGCACAACATGGATGGATTCTTTGTGGCAAAGTTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAAAGCGTCAGCTCAGTCCGAAGAAATAGAAGATGCTGATACCATTGAGAGCAGTGACCAGCAGAATGCTGAAGAGGATGATGACAAGCATTCAGAGCAAGAAGGCATTGCTAAAGAGAGCGGAAAATTGAATGAAAAAGCAGTAGCTGATAAAAAAAGGAAGAGAGATTTCCAAAAGCATTCAGATAAAAAAGGTGTTGGACAAAATGGTGGTGGAACTAAAAATGGGAGGGCAGAAAACAAACCGGTGGCACCAAAAAGGAGGGAAAAGAAGAAACCCCCTCCTATAGAAGAAATCGCAAAAGCCAGGGAAGAGAAGAGGAATGCTCTTAGGGAAGAAAAACGAAAAGCCACATTGAAGAAAAAATCTGGAAACAAGTGAGTTCTCTGTAACATGCAGATTATATTTTCTTAGAGGCGACATGAATGAACACAAAACTAAGATATAACTCGGGTAATATTAGCAGCTGCCAGCTAGAGGTAATATATATCTTGTCGTTAATTGATGACACTCCGAGAAAGGGTTGGAGATCATGTTTGATTTGCTTTAGGAAAAAAAAACCAAAAACTAGGATTTGTGGTTGCACGAAAATCACGAATCCAAAATTTTGTATCTGTATTTGTTGATGTTATATTTTTTCCTTTTGGAAGTGAGCAATGAAAACT
ATGGATTCAATTTACAAAATTAGTGCGACTTTAGTCCTTAACATCTCTCTCTTTACAGCTTCGCTTCTCTCTTCACTCAGCGCCCCCCTCTCTGCCCCTCTGATTCTCGCAGACAAGAGAAGAAGAAGAAGAGTTAATAAGCTTCTCACCATCTCTCCAACCGCAACTGCTCTCTCTCCGATGGCTGGTAAACTCGGTAAGAAAGTGGGTTCTAAATTAGGGAAACCACCAACCAAGAAGAAGCAGAAGAAGGAACCTTTGCCACCTAAGCCACTGGAAAAGGAGGATCTTTTTAGTGACAGTGAAGGAACTGATGGAGATTTTGAAGAAGATGGAGGTTCTGGTGATGAAGAACAACAGGAAATGAACTCGGATTCTGACATGTCTTCTGACTTGGATGACCCCTTTGCTGCTGATATATTAGCAAGCGGTGATGCTGACGATTGTTCCGATGTTCATTCCGATTCGGATGTAGATTCTGATTCAGATGCAGATGATACTGATCTTGTAAGGAAGTCAAAAGCTATTGATGATGAAAGGAAAAGAGAGGAGGAGGAGGGTGATTTAGAATTGCAGCTCAATATTAAAGAAGAAGCTGATGAGTTCAGATTGCCAACAACGGAGGAGCTCGAAGAAGAAACAAATAGACCCCCGGATCTCTCTAATCTCCAAAGGAGGATAAAAGAAATTGTTCGGGTGCTCTCAAATTTCAAGTCATTGAGGCAAGAAAATGTGACACGTAAGGATTACGTTGATCAACTTAAAAGGGACTTGGGTTCATATTATGGATACAATGATTTTCTCATTGAATCGTTAGTGGAGCTGTTTCCCCCTGTTGAGTTGATTGAACTTATTGAAGCATTTGAAAAGCCCCGGCCAATTTCTCTGCGGACAAACACTTTAAAGACTCGCAGACGGGATTTAGCAGGTGTTCTTCTTAACAGAGGTGTCAATTTGGATCCACTAAGCAAATGGTCAAAGGTTGGGCTAGTTGTATATGATTCTCAAGTTCCAGTTGGTGCCACTCCTGAGTATATGGCTGGTCACTACATGCTCCAAAGTGCGAGTTCGTTTCTGCCTGTAATGGCCCTTGCCCCTCAAGAGAATGAACGTATTGTTGATATGGCTGCTGCTCCTGGAGGCAAAACAACTTATGTTGCTGCACTGATGAAAAATAGTGGTATTATTTATGCAAATGAGATGAAGGAGTCGAGACTTAAATCACTCACTGCTAACTTACATCGCATGGGGGTAACAAACACCATTGTCTGTAACTATGATGGAAGAGAGCTACCTAAAGTCTTGGGTCAGAACACTGCCGATAGAATTTTGCTGGATGCTCCCTGCAGTGGCACTGGGGTGATTTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCTGCAGATATACAAAATTGCTCACACCTGCAGAAGGAACTGATACTTGCAGCAATTGACATGGTCGATGCCAACTCAAAATCGGGTGGATACATAGTGTATTCTACCTGCTCCATCATGGTTGATGAGAATGAAGCAGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAACTCGTGCCTTGTGGACTTGATTTTGGCAGGCCCGGATTTGTTCGCTTTAGGCAGCACCGTTTCCACACATCGTTGGACAAGACACGGCGATTCTATCCTCATGTGCACAACATGGATGGATTCTTTGTGGCAAAGTTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAAAGCGTCAGCTCAGTCCGAAGAAATAGAAGATGCTGATACCATTGAGAGCAGTGACCAGCAGAATGCTGAAGAGGATGATGACAAGCATTCAGAGCAAGAAGGCATTGCTAAAGAGAGCGGAAAATTGAATGAAAAAGCAGTAGCTGATAAAAAAAGGAAGAGAGATTTCCAAAAGCATTCAGATAAAAAAGGTGTTGGACAAAATGGTGGTGGAACTAAAAATGGGAGGGCAGAAAACAAACCGGTGGCACCAAAAAGGAGGGAAAAGAAGAAACCCCCTCCTATAGAAGAAATCGCAAAAGCCAGGGAAGAGAAGAGGAATGCTCTTAGGGAAGAAAAACGAAAAGCCACATTGAAGAAAAAATCTGGAAACAAGTGAGTTCTCTGTAACATGCAGATTATATTTTCTTAGAGGCGACATGAATGAACACAAAACTAAGATATAACTCGGGTAATATTAGCAGCTGCCAGCTAGAGGTAATATATATCTTGTCGTTAATTGATGACACTCCGAGAAAGGGTTGGAGATCATGTTTGATTTGCTTTAGGAAAAAAAAACCAAAAACTAGGATTTGTGGTTGCACGAAAATCACGAATCCAAAATTTTGTATCTGTATTTGTTGATGTTATATTTTTTCCTTTTGGAAGTGAGCAATGAAAACT
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc07g052110.2.1 | SL2.50ch07:60655310..60664226 | 707 | + | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc07g052110.2 | SL2.50ch07:60655311..60664510 | 9,200 | + | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc07g052110.2.1.1 | SL2.50ch07:60655311..60655490 | 180 | + | n/a |
| exon | exon:Solyc07g052110.2.1.10 | SL2.50ch07:60658913..60658965 | 53 | + | 1 |
| exon | exon:Solyc07g052110.2.1.11 | SL2.50ch07:60659820..60659929 | 110 | + | 2 |
| exon | exon:Solyc07g052110.2.1.12 | SL2.50ch07:60660199..60660267 | 69 | + | n/a |
| exon | exon:Solyc07g052110.2.1.13 | SL2.50ch07:60660341..60660415 | 75 | + | n/a |
| exon | exon:Solyc07g052110.2.1.14 | SL2.50ch07:60660939..60661031 | 93 | + | n/a |
| exon | exon:Solyc07g052110.2.1.15 | SL2.50ch07:60661138..60661217 | 80 | + | n/a |
| exon | exon:Solyc07g052110.2.1.16 | SL2.50ch07:60661298..60661397 | 100 | + | 1 |
| exon | exon:Solyc07g052110.2.1.17 | SL2.50ch07:60663704..60664044 | 341 | + | n/a |
| exon | exon:Solyc07g052110.2.1.18 | SL2.50ch07:60664154..60664510 | 357 | + | 1 |
| exon | exon:Solyc07g052110.2.1.2 | SL2.50ch07:60656837..60657095 | 259 | + | n/a |
| exon | exon:Solyc07g052110.2.1.3 | SL2.50ch07:60657192..60657376 | 185 | + | 2 |
| exon | exon:Solyc07g052110.2.1.4 | SL2.50ch07:60657474..60657537 | 64 | + | n/a |
| exon | exon:Solyc07g052110.2.1.5 | SL2.50ch07:60657628..60657761 | 134 | + | 2 |
| exon | exon:Solyc07g052110.2.1.6 | SL2.50ch07:60657861..60657944 | 84 | + | n/a |
| exon | exon:Solyc07g052110.2.1.7 | SL2.50ch07:60658029..60658103 | 75 | + | n/a |
| exon | exon:Solyc07g052110.2.1.8 | SL2.50ch07:60658237..60658308 | 72 | + | n/a |
| exon | exon:Solyc07g052110.2.1.9 | SL2.50ch07:60658394..60658467 | 74 | + | n/a |
| intron | intron:Solyc07g052110.2.1.1 | SL2.50ch07:60655491..60656836 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.10 | SL2.50ch07:60658966..60659819 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.11 | SL2.50ch07:60659930..60660198 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.12 | SL2.50ch07:60660268..60660340 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.13 | SL2.50ch07:60660416..60660938 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.14 | SL2.50ch07:60661032..60661137 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.15 | SL2.50ch07:60661218..60661297 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.16 | SL2.50ch07:60661398..60663703 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.17 | SL2.50ch07:60664045..60664153 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.2 | SL2.50ch07:60657096..60657191 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.3 | SL2.50ch07:60657377..60657473 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.4 | SL2.50ch07:60657538..60657627 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.5 | SL2.50ch07:60657762..60657860 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.6 | SL2.50ch07:60657945..60658028 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.7 | SL2.50ch07:60658104..60658236 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.8 | SL2.50ch07:60658309..60658393 | n/a | + | n/a |
| intron | intron:Solyc07g052110.2.1.9 | SL2.50ch07:60658468..60658912 | n/a | + | n/a |
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