Solanum lycopersicum mRNA Solyc08g023470.2.1
 mRNA details
|
| Name | Type |
Length
1,639
|
Organism |
|
Description
Solanesyl diphosphate synthase (AHRD V1 ***- Q2JP50_SYNJB); contains Interpro domain(s) IPR000092 Polyprenyl synthetase
|
|
Location(s)
SL2.50ch08:27659228..27671527
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0008299
- Length
- 12300
- Nb exon
- 12
- Sifter term
- GO:0046982
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc08g023470.2.1 Solanesyl diphosphate synthase (AHRD V1 ***- Q2JP50_SYNJB); contains Interpro domain(s) IPR000092 Polyprenyl synthetase
TCACAACCCTGGGCCTGTGTACCGCTTTGCTTTACATGACCATTCTCCTCTGTCTTCTTGGCAACTAAAACTCAAATTATATACTCAAACTCAGCAGTCAGCGTACACACACACACAAAATAGAAATTGAATACGAACGATGATATTTTCAAAGGGTTTAGCTCAGATTTCCAGAAACCGCTTCAGCAGATGCCGATGGTTATTTTCATTACGTCCCATCCCACAATTACATCAATCCAATCACATCCACGATCCTCCAAAGGTTCTGGGTTGCAGAGTAATTCATTCATGGGTTTCTAATGCTCTTAGTGGTATTGGGCAACAAATTCATCAGCAAAGCACTGCTGTAGCAGAGGAGCAAGTGGACCCATTTTCCCTTGTTGCAGATGAATTATCCCTTCTGACAAACAGGCTGAGATCAATGGTAGTCGCGGAGGTCCCAAAGCTGGCTTCAGCTGCTGAATATTTCTTCAAACTGGGAGTAGAAGGAAAGAGGTTTCGACCAACAGTTTTGCTATTGATGGCAACTGCATTGAACGTACAGATTCCTAGATCTGCTCCGCAGGTGGATGTTGATTCTTTTTCCGGGGATTTGCGTACAAGGCAGCAGTGTATAGCTGAGATCACTGAGATGATCCATGTTGCTAGCCTACTTCATGATGATGTACTGGATGATGCTGACACAAGACGTGGGATAGGTTCTTTAAACTTTGTGATGGGAAATAAGCTAGCTGTACTAGCCGGAGACTTTTTGCTTTCCCGAGCATGTGTGGCACTTGCCTCCTTGAAGAACACAGAGGTTGTATGTCTTCTGGCAACTGTTGTGGAACATCTTGTTACTGGAGAGACAATGCAAATGACGACTTCTTCTGATGAACGTTGTAGCATGGAGTATTATATGCAGAAAACATATTACAAGACTGCATCATTGATTTCAAATAGTTGCAAAGCAATTGCACTACTTGCTGGGCATAGTGCTGAAGTCTCCGTGCTGGCTTTTGACTACGGAAAAAATCTGGGATTGGCATTTCAATTAATAGATGATGTTCTTGATTTCACGGGCACATCTGCAACTCTTGGCAAGGGTTCATTGTCTGATATTCGTCATGGGATTGTAACTGCCCCGATATTGTATGCCATGGAGGAATTTCCTCAACTGCGTACGCTGGTGGACCGAGGTTTTGATGATCCTGTCAATGTGGAGATCGCTCTGGACTACCTTGGGAAGAGCAGAGGGATACAGAGAACAAGAGAACTTGCGAGAAAGCATGCTAGCCTTGCGTCAGCGGCAATTGACTCTCTTCCAGAAAGCGATGACGAGGAAGTTCAGAGATCAAGACGAGCACTTGTAGAACTTACTCACAGAGTCATCACAAGAACAAAATAGGGGGAATAAAGGGAATCTATCAGGTGCAGCCACAGATTCAATTAGTGTATTTTTTTTCCTCAACACGAAATCCTGTATTTCTAGGGACAACATACCCTAACTTTACATTATGATTTTGTTATAGATAGATAACTTATGATTCTTCTCATCCAATAATAACTTGGTAAGACCTTTGTTTTTGCTCGCTCTGTACTGGAAAGAATTTGTAGATTAAATGTGAATGATACACTTTGATGTTGTACAATCCAGTCG
TCACAACCCTGGGCCTGTGTACCGCTTTGCTTTACATGACCATTCTCCTCTGTCTTCTTGGCAACTAAAACTCAAATTATATACTCAAACTCAGCAGTCAGCGTACACACACACACAAAATAGAAATTGAATACGAACGATGATATTTTCAAAGGGTTTAGCTCAGATTTCCAGAAACCGCTTCAGCAGATGCCGATGGTTATTTTCATTACGTCCCATCCCACAATTACATCAATCCAATCACATCCACGATCCTCCAAAGGTTCTGGGTTGCAGAGTAATTCATTCATGGGTTTCTAATGCTCTTAGTGGTATTGGGCAACAAATTCATCAGCAAAGCACTGCTGTAGCAGAGGAGCAAGTGGACCCATTTTCCCTTGTTGCAGATGAATTATCCCTTCTGACAAACAGGCTGAGATCAATGGTAGTCGCGGAGGTCCCAAAGCTGGCTTCAGCTGCTGAATATTTCTTCAAACTGGGAGTAGAAGGAAAGAGGTTTCGACCAACAGTTTTGCTATTGATGGCAACTGCATTGAACGTACAGATTCCTAGATCTGCTCCGCAGGTGGATGTTGATTCTTTTTCCGGGGATTTGCGTACAAGGCAGCAGTGTATAGCTGAGATCACTGAGATGATCCATGTTGCTAGCCTACTTCATGATGATGTACTGGATGATGCTGACACAAGACGTGGGATAGGTTCTTTAAACTTTGTGATGGGAAATAAGCTAGCTGTACTAGCCGGAGACTTTTTGCTTTCCCGAGCATGTGTGGCACTTGCCTCCTTGAAGAACACAGAGGTTGTATGTCTTCTGGCAACTGTTGTGGAACATCTTGTTACTGGAGAGACAATGCAAATGACGACTTCTTCTGATGAACGTTGTAGCATGGAGTATTATATGCAGAAAACATATTACAAGACTGCATCATTGATTTCAAATAGTTGCAAAGCAATTGCACTACTTGCTGGGCATAGTGCTGAAGTCTCCGTGCTGGCTTTTGACTACGGAAAAAATCTGGGATTGGCATTTCAATTAATAGATGATGTTCTTGATTTCACGGGCACATCTGCAACTCTTGGCAAGGGTTCATTGTCTGATATTCGTCATGGGATTGTAACTGCCCCGATATTGTATGCCATGGAGGAATTTCCTCAACTGCGTACGCTGGTGGACCGAGGTTTTGATGATCCTGTCAATGTGGAGATCGCTCTGGACTACCTTGGGAAGAGCAGAGGGATACAGAGAACAAGAGAACTTGCGAGAAAGCATGCTAGCCTTGCGTCAGCGGCAATTGACTCTCTTCCAGAAAGCGATGACGAGGAAGTTCAGAGATCAAGACGAGCACTTGTAGAACTTACTCACAGAGTCATCACAAGAACAAAATAGGGGGAATAAAGGGAATCTATCAGGTGCAGCCACAGATTCAATTAGTGTATTTTTTTTCCTCAACACGAAATCCTGTATTTCTAGGGACAACATACCCTAACTTTACATTATGATTTTGTTATAGATAGATAACTTATGATTCTTCTCATCCAATAATAACTTGGTAAGACCTTTGTTTTTGCTCGCTCTGTACTGGAAAGAATTTGTAGATTAAATGTGAATGATACACTTTGATGTTGTACAATCCAGTCG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc08g023470.2.1 | SL2.50ch08:27659479..27671388 | 416 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc08g023470.2 | SL2.50ch08:27659228..27671527 | 12,300 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc08g023470.2.1.1 | SL2.50ch08:27671266..27671527 | 262 | - | n/a |
| exon | exon:Solyc08g023470.2.1.10 | SL2.50ch08:27661471..27661560 | 90 | - | 1 |
| exon | exon:Solyc08g023470.2.1.11 | SL2.50ch08:27660673..27660771 | 99 | - | n/a |
| exon | exon:Solyc08g023470.2.1.12 | SL2.50ch08:27659228..27659659 | 432 | - | n/a |
| exon | exon:Solyc08g023470.2.1.2 | SL2.50ch08:27669593..27669685 | 93 | - | n/a |
| exon | exon:Solyc08g023470.2.1.3 | SL2.50ch08:27668912..27668992 | 81 | - | n/a |
| exon | exon:Solyc08g023470.2.1.4 | SL2.50ch08:27668764..27668835 | 72 | - | n/a |
| exon | exon:Solyc08g023470.2.1.5 | SL2.50ch08:27667799..27667930 | 132 | - | n/a |
| exon | exon:Solyc08g023470.2.1.6 | SL2.50ch08:27666560..27666646 | 87 | - | n/a |
| exon | exon:Solyc08g023470.2.1.7 | SL2.50ch08:27665687..27665758 | 72 | - | n/a |
| exon | exon:Solyc08g023470.2.1.8 | SL2.50ch08:27664226..27664311 | 86 | - | n/a |
| exon | exon:Solyc08g023470.2.1.9 | SL2.50ch08:27662294..27662426 | 133 | - | n/a |
| intron | intron:Solyc08g023470.2.1.1 | SL2.50ch08:27669686..27671265 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.10 | SL2.50ch08:27660772..27661470 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.11 | SL2.50ch08:27659660..27660672 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.2 | SL2.50ch08:27668993..27669592 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.3 | SL2.50ch08:27668836..27668911 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.4 | SL2.50ch08:27667931..27668763 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.5 | SL2.50ch08:27666647..27667798 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.6 | SL2.50ch08:27665759..27666559 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.7 | SL2.50ch08:27664312..27665686 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.8 | SL2.50ch08:27662427..27664225 | n/a | - | n/a |
| intron | intron:Solyc08g023470.2.1.9 | SL2.50ch08:27661561..27662293 | n/a | - | n/a |
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