Solanum lycopersicum mRNA Solyc08g029050.2.1

mRNA details  
Name
Solyc08g029050.2.1
Type
mRNA
Length
3,798
Organism
Solanum lycopersicum
Description
WD-repeat protein (AHRD V1 *--- A9FTS8_SORC5); contains Interpro domain(s) IPR017986 WD40 repeat, region
Location(s)
SL2.50ch08:38291703..38299765
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Length
8063
Nb exon
33
Sifter term
  • GO:0042803
  • GO:0016564
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g029050.2.1 WD-repeat protein (AHRD V1 *--- A9FTS8_SORC5); contains Interpro domain(s) IPR017986 WD40 repeat, region

ATGTCTCTTAGTAAGGACCTTATATTCTTGATATTGCAATTCTGCAAAGAGGAGAACTTCACGAAAACTGCTCGCATGTTAGGGCAGGAGTCAGAGTTATTCTTTGACATGGGACATATTGAAGCTCTCGTTCTCGGTGGCAAGTGGGATGAAATTGAGAACTATCTTTCAGGTTTCACTGGTGTCACTGAAAGCAGATATTCTAAAAAAATGTTTTTCGAGATTAGGAAACAGAAGTTCCTTGAGGCACTCGACAGGCAAGATCGTAAAACTGCTCTTGAGATCCTTATGAAAGACCTTCAAGTGTTTGCCGAGACAAATAAAGAGCTTTATGCTGAGATGACTCAGCTTCTTACATTCGATAACTTCAGAGAACATCCTTCACTTGCTTTATATGGAGACACATTAACTGCTAGGAACCGCATAATGAAGATACTTAGGGTTGTCATTGAAACAAACCCCCAGTTAAATGGAAAACTCCACTTTCCAGAATTAACCAAGTCAAGATTGCGCCGTCTAATTAATCAAAGCTTGAACTGGCAGCATGCTCATTGTGCAAATCCTCAGCAAGAACCGGAGATCAAAACACTCTTCATTGATCACAAGTGTTCCATACCTGAAGATCAATCGATTATGCAAAGGCCAGGGCCTACCCAAACCATATCGGCTGCAACCCCAGATCATTTGGTTTTGCAAATGCCCAGGCCTAGCAAAATCATATCGGCTGCAACCCCAGCTCAGTCGGATACGCAGATGCCAAGGCCTAGCAATACCATATCGGCTGCAGCCCCTGATAAGTCGATTATGCAAATGCCAAAGCCTAGCAAAGCCATATCGGCTGCAACCCCAGCTCAGTTGGTTAAGCAAATGCCTGGGCCTAGCAAAGCCATATCGGCTGCAACCCCAGCTCAGCCGGATACACAGATGCCAAGGCCTAGCAATACCATATCGGCTACAACCCCAGATCAGTTGATTATACAAATGCCAAAGCCTAGCGAAACCACATCGGCTTCAAATCCAGATCAGTCGGTTGTGCAAATGCCAAGGCCTAGCGAAACTACATCGGCTTCAAATCCAGATCAGTCGATTACGCAAATGCCAATGCCTAGCAAAACCATATCGTCTGCAAACCCAGATTGTCAACAAATACATTATTCTAGTTCTTCCATTGTAACTGATGACATAGCTTCTGCTTCTACTTCGAAGGCTGTTCAGGATTCTGGTAATTTATCTGATGTAAACACTACAAGGAATATGAACGAGAAAGTGTTATCCAAAACTGCTCCTTGTCAAGACCAGGATGCATCGGTTAACCTCTCGGATGACTTTCCGAAGACCGTTGAACGTGTTTTAACCATTGGCAATCCACCGACGGCCAGCGATTATCCAACAATCAGAAGCATTTATCCGACGGTCAACTATTATCCAACCACAATGGATTTTCACCCTGTTCAACAGACACTTCTGATAGTTGGAGACGGTGGTGGAAGCGTAGAGCTGTGGGATGTTAGTTCTGGAAAAATGTTGTTTCGAAGAACGTTAATGATCTGGGAAGTAGAGGTTTTTTCACCGGACTTTCTGAAAAGTATGGGTGAAGATCCGAGGATCTCAGTAAATCGAGTCCTATGGAATCCCGATGGCTCTCTCTTTGGGGTTGCATCCTCTAAGAACATTGTTCAACTATATAGTTATCATAATAATGACAATCATGCTGAAAACCATCTGGAGATTGAGGCTCATTTTGGAAGTATAAATGATCTTGCATTTTCTAAGCCAAATAACCAACTTCTTGTCATAACGTGCGGCGAGGACATGTTGGTCAAGGTCTGGAATGCTAACAATGGTGCGAAACAATATACTTTTGAAGGTCATAAAGCCCCCGTTTACTCTCTTTGCCCTCACGAGAAGGAAGATGTTCATTTTATATTATCAACATCAACTAATGGTGAAATAAAAGCATGGATATATGAAAACTCGGGACCATGTGTTTCTTACGAGGCTCCTAGTAAATGTTGCATGAGAATGCTTTACAGTGCTAATGGTAAAAGGCTTTTTTCATGTGGGACTAATAAAGATGGAGACTCCCACTTGGTGGAATGGAATGAAACTGATGGTTTCATAGTAAGGACCTACCTTGGACTTGGCAAATGTTCTTCGGGTGTTGTGGAATTCGATATCAGCAGGAATAACTATGTGGCTGCTGGAGATTCCCATGTAATCAAATTTTGGAATGTTAATGATGCTCAACTCTTGACAGTTGTCGATGCTGGTGGAGACCTTCCTGCAAGTCCATATGTTCGATTCAACAAGAATGGCACTTTATTGGCTGTCTCTGTGGATCATAACAGTGTCAAAATCTTGGCAAATGATGGTGGCCGCATTTTGCTTCAAACTTCATTGGATGCCTCTACATATCTTTCTACAAGAGAGCTTGCAGGCAATTCCCTAAGTGGTCCTGCTAATAGTAGCTCGATTGATGGCATTGTCCCTCCGGAAATGACAGCAGAAAACCTGGCAAAGATGGAGCATCACAAGATATTAGGGAATCCGAGCACCTCTAAGGTCGTCCAAATTTCACGATGTCAATCTTTGAGGCTCCCCTCGGAAGTGAAGACAAATAAGGTGTGTAGGTTAGCATATGCTCAGGCAGGAAATATTCTTGTGGCCTTAGTCACAGGTGGTATTCATCTAATCTGGAAATGGTCCGAGAGTGATTCTAATTTGACTGGCCAGACAACACCAAAATGCACTCCTCAACTATGGCAACCAAGGAGTGGGGTGGTTCCGGAAAACAGTCTGCTCAGTAGTGATGCAGGAGCAGTTTCACCTTGCATAGCTTTGACCAATAATGGTTTTTATGCACTTTCGGCATCCGGAGGAGCGGTTTCTATATTTAATATAAACCTCTATAAGATTATGAAAAGTATCACACCTCCTAAACCTGCAGCAACATGTATCGCTTGCCACCCGACTAATAACAATGTGATTGCTGTTGGGATGGATGATTTGACAATCATTGTCTACAGTGTCCGTACGGAGGAGTTAATAAGCAGGCTTAATGGACACTCTAAAAGGATTACTGGACTAGCATTCTCTAACACAATGAATGTGCTTGTTTCTTCAGGAGCAGACTCTCAGATAGTGGTGTGGAATTCAACAAACTGGGAGAGGGAAGGAAGTACAATGTTGCAGACATCTGCAGACTGGTTACCAACAGAAGTATCAGAGACATCTGTCGAATTTCAGCGAGATGAGAAATGCTTCCTTGTTGTACATGAGACTCAAATTGCAATCTATGAACCAACAAAGCTAGAATGTGTGAAGCAGTGGATAATCAAAAACTTCTGTGCGCGAATTTCACATGCAACATTTTCATGTGATAGTGAGTGGATATATGCTGTTATGAAAGATGGGATCGTTTTGATACTCTCTGCTTCAGATCTCTCTCCCAAATATGAGATTGATCCTTCTACTTTCCTCACTTCTGATTTGAGTTGCAGTGCTCATGTGTTCCCTGTGGTGGTTGCTGCTCATCCTGAAAATCCAAACCAGTTAGCTTTGGGTTTAAACGACGGTGGAGTAGTCGTTATTGAACCTTCAGAGTCTGATGGTAAATGGTGTGAGCCACCCAACGCCACGACTCTTACCAATGAGCAACCAATATAGCAGTAGTTAACTTCGTCCATTTGATGATTTGTCATCACTTAGAGCTGCTTCTTGCTATTGACAAACAATAACTATATTTATTTTATTTTCATAAAGACCATGCTATAAATGGACAACTATTTATGTACTCTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g029050.2.1SL2.50ch08:38291834..382997651,222-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g029050.2SL2.50ch08:38291703..382997658,063-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g029050.2.1.1SL2.50ch08:38299689..3829976577-n/a
exonexon:Solyc08g029050.2.1.10SL2.50ch08:38297784..3829784057-n/a
exonexon:Solyc08g029050.2.1.11SL2.50ch08:38297340..3829739657-n/a
exonexon:Solyc08g029050.2.1.12SL2.50ch08:38297198..3829725457-n/a
exonexon:Solyc08g029050.2.1.13SL2.50ch08:38297047..3829710357-n/a
exonexon:Solyc08g029050.2.1.14SL2.50ch08:38296580..3829666788-n/a
exonexon:Solyc08g029050.2.1.15SL2.50ch08:38296405..3829647571-2
exonexon:Solyc08g029050.2.1.16SL2.50ch08:38296080..38296287208-n/a
exonexon:Solyc08g029050.2.1.17SL2.50ch08:38295876..38295985110-2
exonexon:Solyc08g029050.2.1.18SL2.50ch08:38295725..3829579470-n/a
exonexon:Solyc08g029050.2.1.19SL2.50ch08:38295552..3829562877-2
exonexon:Solyc08g029050.2.1.2SL2.50ch08:38299419..38299598180-1
exonexon:Solyc08g029050.2.1.20SL2.50ch08:38295368..3829546396-n/a
exonexon:Solyc08g029050.2.1.21SL2.50ch08:38295170..3829526596-n/a
exonexon:Solyc08g029050.2.1.22SL2.50ch08:38294957..38295084128-n/a
exonexon:Solyc08g029050.2.1.23SL2.50ch08:38294640..38294874235-1
exonexon:Solyc08g029050.2.1.24SL2.50ch08:38294252..38294398147-n/a
exonexon:Solyc08g029050.2.1.25SL2.50ch08:38294109..3829417163-n/a
exonexon:Solyc08g029050.2.1.26SL2.50ch08:38293814..38293942129-n/a
exonexon:Solyc08g029050.2.1.27SL2.50ch08:38293605..38293715111-n/a
exonexon:Solyc08g029050.2.1.28SL2.50ch08:38293338..38293517180-n/a
exonexon:Solyc08g029050.2.1.29SL2.50ch08:38293032..38293160129-n/a
exonexon:Solyc08g029050.2.1.3SL2.50ch08:38299219..38299332114-1
exonexon:Solyc08g029050.2.1.30SL2.50ch08:38292853..3829294896-n/a
exonexon:Solyc08g029050.2.1.31SL2.50ch08:38292367..38292555189-n/a
exonexon:Solyc08g029050.2.1.32SL2.50ch08:38292097..38292263167-n/a
exonexon:Solyc08g029050.2.1.33SL2.50ch08:38291703..38292006304-1
exonexon:Solyc08g029050.2.1.4SL2.50ch08:38298971..38299129159-1
exonexon:Solyc08g029050.2.1.5SL2.50ch08:38298640..38298757118-1
exonexon:Solyc08g029050.2.1.6SL2.50ch08:38298510..3829856657-n/a
exonexon:Solyc08g029050.2.1.7SL2.50ch08:38298372..3829842857-n/a
exonexon:Solyc08g029050.2.1.8SL2.50ch08:38298224..3829828057-n/a
exonexon:Solyc08g029050.2.1.9SL2.50ch08:38298076..3829813257-n/a
intronintron:Solyc08g029050.2.1.1SL2.50ch08:38299599..38299688n/a-n/a
intronintron:Solyc08g029050.2.1.10SL2.50ch08:38297397..38297783n/a-n/a
intronintron:Solyc08g029050.2.1.11SL2.50ch08:38297255..38297339n/a-n/a
intronintron:Solyc08g029050.2.1.12SL2.50ch08:38297104..38297197n/a-n/a
intronintron:Solyc08g029050.2.1.13SL2.50ch08:38296668..38297046n/a-n/a
intronintron:Solyc08g029050.2.1.14SL2.50ch08:38296476..38296579n/a-n/a
intronintron:Solyc08g029050.2.1.15SL2.50ch08:38296288..38296404n/a-n/a
intronintron:Solyc08g029050.2.1.16SL2.50ch08:38295986..38296079n/a-n/a
intronintron:Solyc08g029050.2.1.17SL2.50ch08:38295795..38295875n/a-n/a
intronintron:Solyc08g029050.2.1.18SL2.50ch08:38295629..38295724n/a-n/a
intronintron:Solyc08g029050.2.1.19SL2.50ch08:38295464..38295551n/a-n/a
intronintron:Solyc08g029050.2.1.2SL2.50ch08:38299333..38299418n/a-n/a
intronintron:Solyc08g029050.2.1.20SL2.50ch08:38295266..38295367n/a-n/a
intronintron:Solyc08g029050.2.1.21SL2.50ch08:38295085..38295169n/a-n/a
intronintron:Solyc08g029050.2.1.22SL2.50ch08:38294875..38294956n/a-n/a
intronintron:Solyc08g029050.2.1.23SL2.50ch08:38294399..38294639n/a-n/a
intronintron:Solyc08g029050.2.1.24SL2.50ch08:38294172..38294251n/a-n/a
intronintron:Solyc08g029050.2.1.25SL2.50ch08:38293943..38294108n/a-n/a
intronintron:Solyc08g029050.2.1.26SL2.50ch08:38293716..38293813n/a-n/a
intronintron:Solyc08g029050.2.1.27SL2.50ch08:38293518..38293604n/a-n/a
intronintron:Solyc08g029050.2.1.28SL2.50ch08:38293161..38293337n/a-n/a
intronintron:Solyc08g029050.2.1.29SL2.50ch08:38292949..38293031n/a-n/a
intronintron:Solyc08g029050.2.1.3SL2.50ch08:38299130..38299218n/a-n/a
intronintron:Solyc08g029050.2.1.30SL2.50ch08:38292556..38292852n/a-n/a
intronintron:Solyc08g029050.2.1.31SL2.50ch08:38292264..38292366n/a-n/a
intronintron:Solyc08g029050.2.1.32SL2.50ch08:38292007..38292096n/a-n/a
intronintron:Solyc08g029050.2.1.4SL2.50ch08:38298758..38298970n/a-n/a
intronintron:Solyc08g029050.2.1.5SL2.50ch08:38298567..38298639n/a-n/a
intronintron:Solyc08g029050.2.1.6SL2.50ch08:38298429..38298509n/a-n/a
intronintron:Solyc08g029050.2.1.7SL2.50ch08:38298281..38298371n/a-n/a
intronintron:Solyc08g029050.2.1.8SL2.50ch08:38298133..38298223n/a-n/a
intronintron:Solyc08g029050.2.1.9SL2.50ch08:38297841..38298075n/a-n/a
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http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17898540%2Fdetails feature 17898540
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