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Solanum lycopersicum mRNA Solyc08g042050.2.1

mRNA details  
Name
Solyc08g042050.2.1
Type
mRNA
Length
2,707
Organism
Solanum lycopersicum
Description
DEAD-box ATP-dependent RNA helicase 3 (AHRD V1 **** RH3_ORYSJ); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch08:24016201..24026339
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0008026
  • GO:0005524
  • GO:0008270
Length
10139
Nb exon
10
Sifter term
  • GO:0004004
  • GO:0017151
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g042050.2.1 DEAD-box ATP-dependent RNA helicase 3 (AHRD V1 **** RH3_ORYSJ); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

GTGACTGAACCCATAAAAGACCCTGGGCAGTAGGCATTCGTTCCTATACTATAAACCTTCCCACCCTTATCATCACTTCTATCTATCTCCTTATCCCTTCTCTCCCATGGCCTCTTCTTCTTCCATTATAGGAGTTTCCTCCATATACCAAACCAATCCTTCACTCGAACTTTCTCGAAGACCCACTGCTACTCCTCCTCTATCTCTTCCTTTCTCCATTGAAAAATCCAATTTTCATGTTCATGTTCGTCTCAGACGTCCTTTTCTGGCTTCTGCTGTAGTAACTCCTACTTCTTCGGTGCTAAGTGAAGAAGCCTTTAAAGGAATTGGGGGTTTTGGGAAGGATTCTTTGAATGTTAGTGAAAGTGAATATGATTCTGAGGATGAGGTTGAGGATAATGAGTCAAATGAGGATGAACTTTCTGTTTCTAAACTTGGTTTACCTCACAGGCTTGTTGACGCTCTTGAGAAGCGTGGAATTACTCAACTTTTCCCAATTCAGAGAGCTGTTCTAGTGCCTGCACTGGAGGGTCGGGATATAATTGCTCGTGCAAAGACAGGGACGGGGAAGACACTCGCCTTTGGTATTCCAGTATTGAAAAAGCTTAGTACAGATGAAGAAATGAGAAATACTCAGAGACGGGGACGGCTTCCCAAAGTTTTGGTACTTGCACCTACTCGAGAGTTAGCCAATCAAGTTGAGAAGGAAATGAAAGAGTCGGCACCGTACTTGAACACAGTCTGCATATACGGAGGCGTTTCTTATGCTACGCAGCAAAATGCACTTTCCCGTGGGGTTGATGTTGTTGTTGGAACTCCAGGTAGACTTATTGACCTGATAAACAATAACACCTTGAAACTTGGGGAGGTGGAATATTTGGTCCTCGACGAGGCTGATCAAATGCTCGCAGTTGGATTTGAGGAAGATGTGGAAGTTATTTTGGAAAAACTTCCACCACAGAGGCAAAGCATGCTTTTCTCAGCCACCATGCCTGGCTGGGTAAAGAAACTGTCTAGGAAGTACTTGAACAATCCTTTGACAATTGACTTGGTTGGTGATCAAGATGAAAAGCTGGCAGAGGGGATCAAGCTTTATGCTCTATCAGCTACATCAACATCAAAACGATCTATACTTGGTGATCTTGTTACAGTTTATGCAAAGGGTGGAAAGACAATTGTTTTTACACAGACAAAACGAGATGCTGATGAGGTTTCAATGGCATTATCAAATAGCATTTCTTCTGAGGCATTGCATGGTGACATTTCTCAACATCAGAGGGAAAGAACACTAAATGGATTTAGGCAAGGAAAATTCACTGTGCTTGTTGCGACTGACGTTGCATCTCGTGGTCTTGATATACCTAATGTTGACTTAGTAATCCATTATGAATTACCCAACGATCCAGAAACTTTTGTTCATCGCTCTGGTCGAACTGGCCGTGCTGGAAAAGAAGGCATTGCTATTCTGATGTACACAGGTAGTCAAAGGCGAACTGTCAGATCTCTCGAACGTGATGTTGGGTGCAAGTTTGAATTCGTTAGTCCTCCATCTGTCAAAGAGGTTTTAGAGTCATCAGCTGAACATGTGGTGGCTGCACTTAATGGAGTTCATCCCGAATCTGTTGAGTACTTCATTCCAACTGCGCAACAGTTGATGGAGCAACAAGGAGTGAATTCCCTTGCTGCTGCACTTGCTCTTTTGGGTGGATTTTCCAAACCGCCATCTTCTCGATCTCTAATAACTCATGAACAGGGGTGGACTACATTACAGCTGACACGTGATTCTGAAACTTCCCGAGGATTCCTGTCGGCAAGATCTGTTACTGGTTTCCTCTCTGATGTCTATTCACCAGCTGCTGATGAAGTTGGCAAAATTCACCTAATTGCAGATGAAAGGGTTCAGGGGGCCATCTTTGATCTTCCTGAGGAGACTGCTGCAGATCTACTAAATCAGGAATTACCTCCTGGAAATACTATTTCCAAGATTACCAAGTTACCTGCTTTACAAGACGATGGGCCAGCTGGTGATTTCTATGGGAGGTTTTCAAGCAGGGATACTAGGGGGACACGAGGAGGTTTAAGAGACCGTAGAGGCAGATATTCCCAGGGTTCTTCTAGTGGCCGTTACTCTGATAATGATGATGATAATTGGGGGAATGACTCTAGGTCGCGAGGTGGCCGGACAAGAAGGGGAGGAAGTGATTGGCTGATCAGTGGTGATAGGGATAAGCGCTCTAGCAGGTCTTTTTCTGGAGGAAGCAGAGACAGAAGCTTTGGTGGTGCATGTTTCAATTGTGGGCGCAGTGGTCACCGAGCATCTGAATGCCCTAACAAAAGAGACTACTAGGTCCTGTAGGTTGTCTCATCATCCTTGGTGCAGTTTTTGTATGTGGGTGACAATTTCTGATATACCTCTCACTATTTCCTGTGAAAGCCAGCAATGAAGATAAAGGAGTTTTGAGTATATGTGATACATATGAGCAACAGCAAGATCCTTTACTGTTCCCTCCAGAAAGCACCATCCCTAAAGCTTCACATGGCCCTACCGATGATTAATTGATTTTCTGTTTCTGAAGCATGCAATCAGTTGCCAGTTATTTTCTCTTAGTTTGTTGATGTTGTAGGTGAAGTAGGGTAAGATATATCAACTTTCAGTATAAATATGTCGGACTGCAGAGTCTTCCAATTTATCTCATCTTTGAGATGA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g042050.2.1SL2.50ch08:24016560..24026233747-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g042050.2SL2.50ch08:24016201..2402633910,139-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g042050.2.1.1SL2.50ch08:24025838..24026339502-n/a
exonexon:Solyc08g042050.2.1.10SL2.50ch08:24016201..24016639439-n/a
exonexon:Solyc08g042050.2.1.2SL2.50ch08:24024980..24025116137-n/a
exonexon:Solyc08g042050.2.1.3SL2.50ch08:24024487..24024898412-n/a
exonexon:Solyc08g042050.2.1.4SL2.50ch08:24024132..2402423099-1
exonexon:Solyc08g042050.2.1.5SL2.50ch08:24023822..24024046225-n/a
exonexon:Solyc08g042050.2.1.6SL2.50ch08:24022674..24023051378-n/a
exonexon:Solyc08g042050.2.1.7SL2.50ch08:24021820..24021963144-n/a
exonexon:Solyc08g042050.2.1.8SL2.50ch08:24021586..2402168196-n/a
exonexon:Solyc08g042050.2.1.9SL2.50ch08:24021190..24021464275-n/a
intronintron:Solyc08g042050.2.1.1SL2.50ch08:24025117..24025837n/a-n/a
intronintron:Solyc08g042050.2.1.2SL2.50ch08:24024899..24024979n/a-n/a
intronintron:Solyc08g042050.2.1.3SL2.50ch08:24024231..24024486n/a-n/a
intronintron:Solyc08g042050.2.1.4SL2.50ch08:24024047..24024131n/a-n/a
intronintron:Solyc08g042050.2.1.5SL2.50ch08:24023052..24023821n/a-n/a
intronintron:Solyc08g042050.2.1.6SL2.50ch08:24021964..24022673n/a-n/a
intronintron:Solyc08g042050.2.1.7SL2.50ch08:24021682..24021819n/a-n/a
intronintron:Solyc08g042050.2.1.8SL2.50ch08:24021465..24021585n/a-n/a
intronintron:Solyc08g042050.2.1.9SL2.50ch08:24016640..24021189n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17899405%2Fdetails feature 17899405
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