Solanum lycopersicum mRNA Solyc08g060970.2.1
 mRNA details
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| Name | Type |
Length
1,432
|
Organism |
|
Description
Polygalacturonase (AHRD V1 **-* Q9ZPI8_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase fold
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|
Location(s)
SL2.50ch08:46145278..46150021
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0005975
- Length
- 4744
- Nb exon
- 10
- Sifter term
- GO:0004650
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc08g060970.2.1 Polygalacturonase (AHRD V1 **-* Q9ZPI8_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase fold
CTGATTCACCGGCACAGCCATAATTCACACATCCAAACTGTTTCTACAATTTAATTCCTTCGATCGTTCGCCCACAGGCTCCTGTCCGAGTCCAGTTCCTGTAATCAGCTATGGAGGGCCAAGCACTTATCTTTCTGATTTGTATTACTACATTTCTTATTGAAAGAAGTGTTGCTGGTATTTTTGATGTAACATGTTATGGCGCTTTTGGAGATGGAGTGCACGATGACACTCAAGCATTCAAACAAGTTTGGAGAGCTGCGTGTAGCGATGAAAATCCATCAATACTTATACCAAGTGAAAAATCATTTCTAGTAGGGCCTATAACATTTCAAGGGCCTTGTAAGTCAGCCAATATTCATCTACAATTATTAGGATCCATTGTAGCACCCAAGGACCCAGTGGCATGGACAGGTTGTGAAAATGTATGTTGGATTTATTTTACAGGAGTTGCTGGTCTTTTTATCAATGGTTCTGGTACTATCAATGGCAATGGTCAACGATGGTGGGATACTCCTAGCCGTACCAGGGTCAACGGAACTTGCACTAAACCAACGGTTGTTCAATTTAATTACTGTAATGGACTTCGATTGAATGGAATAAAGCTAGTGAATAGTTCAAGGGACCATATAATTCTTACTTATAACAAGGGAGTAACGATCTCAAATATTCATATAAGTGCACCAAATTATAGTCGTAATACCGATGGTATCGATATCTTTTTCTCTAGACAAGTTCAAATTAGAGACTCCATTATTCAAACAGGTGATGACTGCATTGGCATCAATACTGGATGCTCTGATATCAATATTACTGGTATTAGATGTGGACCAGGTCATGGTATAAGTATTGGAAGTTTAGGTCCAAATAATACATTTGCTAATGTGGAAAACGTTTATATTACGAATTGCCACTTAGAGGATACCCAAAATGGTGTAAGAATTAAGACATGGCAGGGTGGTTCAGGATATGCTAGATCTATACATTTTGAGAATATTAACCTCAAAAATGTGGAAAACCCAATCATTATTGATCAAAATTATTGCAATAGTGTCCATTCATGTCAACCTCAGGTAAGTGCAGTTAAAGTGAGCAATGTAACATACAAGAAAATATATGGAACTACAAGCAGCAAGCTAGCAATAAAGATGAATTGTAGTAATAGCACAGCTTGCACTAATGTTGAGTTGGAGAATATATACATAACTTCAGTTGAGCCTGGAAAAAAGATTTTTGCTACTTGTAATAATGTTAAAGGAAAAGCTTCTTCAAACTCACCTCATGTATCTTGTTTGTCACAATGATAACTATATAGCAAAATATTTCTATAACCATTTTTTAAGACTGGTAATTAAATTTGACAAAAAAACTTAACTAGTGATCCACTAAGGTTTGGAGTTGAGTGAGTATTATCAGATACCTCACAATTGTT
CTGATTCACCGGCACAGCCATAATTCACACATCCAAACTGTTTCTACAATTTAATTCCTTCGATCGTTCGCCCACAGGCTCCTGTCCGAGTCCAGTTCCTGTAATCAGCTATGGAGGGCCAAGCACTTATCTTTCTGATTTGTATTACTACATTTCTTATTGAAAGAAGTGTTGCTGGTATTTTTGATGTAACATGTTATGGCGCTTTTGGAGATGGAGTGCACGATGACACTCAAGCATTCAAACAAGTTTGGAGAGCTGCGTGTAGCGATGAAAATCCATCAATACTTATACCAAGTGAAAAATCATTTCTAGTAGGGCCTATAACATTTCAAGGGCCTTGTAAGTCAGCCAATATTCATCTACAATTATTAGGATCCATTGTAGCACCCAAGGACCCAGTGGCATGGACAGGTTGTGAAAATGTATGTTGGATTTATTTTACAGGAGTTGCTGGTCTTTTTATCAATGGTTCTGGTACTATCAATGGCAATGGTCAACGATGGTGGGATACTCCTAGCCGTACCAGGGTCAACGGAACTTGCACTAAACCAACGGTTGTTCAATTTAATTACTGTAATGGACTTCGATTGAATGGAATAAAGCTAGTGAATAGTTCAAGGGACCATATAATTCTTACTTATAACAAGGGAGTAACGATCTCAAATATTCATATAAGTGCACCAAATTATAGTCGTAATACCGATGGTATCGATATCTTTTTCTCTAGACAAGTTCAAATTAGAGACTCCATTATTCAAACAGGTGATGACTGCATTGGCATCAATACTGGATGCTCTGATATCAATATTACTGGTATTAGATGTGGACCAGGTCATGGTATAAGTATTGGAAGTTTAGGTCCAAATAATACATTTGCTAATGTGGAAAACGTTTATATTACGAATTGCCACTTAGAGGATACCCAAAATGGTGTAAGAATTAAGACATGGCAGGGTGGTTCAGGATATGCTAGATCTATACATTTTGAGAATATTAACCTCAAAAATGTGGAAAACCCAATCATTATTGATCAAAATTATTGCAATAGTGTCCATTCATGTCAACCTCAGGTAAGTGCAGTTAAAGTGAGCAATGTAACATACAAGAAAATATATGGAACTACAAGCAGCAAGCTAGCAATAAAGATGAATTGTAGTAATAGCACAGCTTGCACTAATGTTGAGTTGGAGAATATATACATAACTTCAGTTGAGCCTGGAAAAAAGATTTTTGCTACTTGTAATAATGTTAAAGGAAAAGCTTCTTCAAACTCACCTCATGTATCTTGTTTGTCACAATGATAACTATATAGCAAAATATTTCTATAACCATTTTTTAAGACTGGTAATTAAATTTGACAAAAAAACTTAACTAGTGATCCACTAAGGTTTGGAGTTGAGTGAGTATTATCAGATACCTCACAATTGTT
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc08g060970.2.1 | SL2.50ch08:46145405..46149911 | 398 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc08g060970.2 | SL2.50ch08:46145278..46150021 | 4,744 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc08g060970.2.1.1 | SL2.50ch08:46149906..46150021 | 116 | - | n/a |
| exon | exon:Solyc08g060970.2.1.10 | SL2.50ch08:46145278..46145636 | 359 | - | n/a |
| exon | exon:Solyc08g060970.2.1.2 | SL2.50ch08:46147592..46147711 | 120 | - | n/a |
| exon | exon:Solyc08g060970.2.1.3 | SL2.50ch08:46147355..46147486 | 132 | - | n/a |
| exon | exon:Solyc08g060970.2.1.4 | SL2.50ch08:46147062..46147223 | 162 | - | n/a |
| exon | exon:Solyc08g060970.2.1.5 | SL2.50ch08:46146951..46146977 | 27 | - | n/a |
| exon | exon:Solyc08g060970.2.1.6 | SL2.50ch08:46146365..46146572 | 208 | - | 2 |
| exon | exon:Solyc08g060970.2.1.7 | SL2.50ch08:46146169..46146250 | 82 | - | 1 |
| exon | exon:Solyc08g060970.2.1.8 | SL2.50ch08:46145973..46146081 | 109 | - | n/a |
| exon | exon:Solyc08g060970.2.1.9 | SL2.50ch08:46145740..46145856 | 117 | - | n/a |
| intron | intron:Solyc08g060970.2.1.10 | SL2.50ch08:46145637..46145739 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.2 | SL2.50ch08:46147712..46149905 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.3 | SL2.50ch08:46147487..46147591 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.4 | SL2.50ch08:46147224..46147354 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.5 | SL2.50ch08:46146978..46147061 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.6 | SL2.50ch08:46146573..46146950 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.7 | SL2.50ch08:46146251..46146364 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.8 | SL2.50ch08:46146082..46146168 | n/a | - | n/a |
| intron | intron:Solyc08g060970.2.1.9 | SL2.50ch08:46145857..46145972 | n/a | - | n/a |
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