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Solanum lycopersicum mRNA Solyc08g067210.2.1

mRNA details  
Name
Solyc08g067210.2.1
Type
mRNA
Length
4,586
Organism
Solanum lycopersicum
Description
Ribonuclease 3-like protein 2 (AHRD V1 *-*- RTL2_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III
Location(s)
SL2.50ch08:56225661..56253961
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006396
  • GO:0005524
  • GO:0005622
Length
28301
Nb exon
19
Sifter term
  • GO:0005515
  • GO:0003725
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g067210.2.1 Ribonuclease 3-like protein 2 (AHRD V1 *-*- RTL2_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III

ATGGCGACATCAACTTGTGAGCTAATTTGGCTCAAACAGTTGCTGAGAGAGCTAAAATTTGGCGAAATTAATCAGATGGAACTTGTGTGTGATAATCAAGCGGCTCTTTATATCGCATCAAATCTATTTGATGCTGCATTAGCTGATTTGAAACTGTCACTGCCAAGTCAGTACAAAGATACAGATGATATATATAAGAAGCTTCGGAAGAGATTGTCCAATTGTTATGCAAAGATATTGTGTTGCCTTGAAAATCTAGGCATCATTTGTGCTTATGAGGCTGTTAAAATCTGCTTGGAAAATGTGCCTAATGACAAAGATGAAAATGAGATTCTAAGGACAAGTTCTCTACAACATAGATACTTCTTGGAGGAGGCATTGTCAATTGTCCAGGAATCAATGCCACAAGACTGTGAGAGCCTCTTCGATGTTGGATATGACTTGTCAGCAACTCTGTCAATGGGCCATATATCTTCAAAACTGCAAGTGCTTCTTGAAATTTTTCAACTCCTTGGGAAAGCCACTCAAGTACGCTGTCTCATTTTTGTTGAAAGAATTATAACAGCTAAGGTTATTGAAAGAGTTATGAAGAAAATGACCTGGTTTTCACATTTCACAATAGCATATTTGACTGGAACAAACACATCGGTCGATGCTCTGACACGAAAAGCGCAAAAAGAAACCTTGGGATCTTTTCTCTCTGGAAAGGTCAATTTATTATTTGCCACTGATGTGGTTGAGGAGGGAATTGATGTGCCACACTGTTCCTCTGTAATACGATTTGATTTACCCAAGACAGTTCGTAGTTATGTCCAATCTAGGGGACGTGCTCGTCAGACTGAGTCTCAGTATATACTAATGCTTGAGAGAGGAAACAAGAAGCAGAGGGAGCAGATGTTCGATATTATCAGGAGTGAATATTCTATGACAGATACAGCTATAAAGAGAGATCCTGATGATTCTGTGGTGAAACCTTGTCTTGTGAAGGAAACTAAAGCATATTATGTGGAGGCAACTGGAGCATCAGTAACTGCAGATTCTAGTGTCAGTGTCTTGACTAAATATTGTGAAATGCTCCCTGGAGATAAATTCTTCTCTCCAAAGCCAGTGTTTCAGTACATTTTGTCTGGAGAGTTGTACCGGTGTAAGTTGACATTACCTCCAAATGCAGCTCTCCAAACGATTGTTGGTCCAGAATGCAGGAGTTCTCAACTATCAAGGCAGCTTGTCTGCTTGGATGCATGTAAGAAGCTGCACCAGATTGGTGCTCTCAATGACCATCTTCTTCCTTTCAATGAAAAACCTCCCCGAGGTGGCTCTGATGTGCAGGACAGAAAATTAGGCGCAGGAACAACAAAGTTGAAAGAATTACATGGGACAGCTTGTATTAGTGCATTATCTGGGTCATGGGGAAATGATCCTAATGGAGAAGTATATCAAGTGTATAAAATGAACTTCCTTTGCAACATCAAGGAAGTTAAATATTCCAGTTTTATCCTTTTGCTTCAATCAGAACTTGATTACGATGTGGGAAATGTGGAAGTGGAGCTTTTCTTAGTTTCCAAGTTTGTCGAATCCTCTGTGTCGCATTGTGGGAAAGTACATTTGGATTCCCAACAGGTGGCAAAAGCAAAAATATTCCAAGAACTATTCTTTAATGGGCTGTTTGGTAAATTATTTATTAAATCATCGTGTGGAAGGAAATTTCTGCTTGATACAGAAAAATCTTTGTGGGAGCCATCGAACATGTACTTGCTTCTACCGCTGGATCCTTTAGATTCAAGTTGTGAACCCTACAGAGTTGATTGGGAAGCAATTGAATCTTCTGTTTCAGTTGTAGAATTTTTGAAAAAAAATGGGTGGTTAAGCAAGGAGAAATCTGAAGCTAAACGGAAGAACTCCTTAGTTGATAGGACTGCATCATTTGTGGAAGATATTGATCAAACCGATTTGATTCACTTTGCCAATATGTCAATCTCAAGAAGCAAGATTATGGACATGGTTGTTGTGGCCATTCATACTGGAAGAATTTATTCTGTTCTGGAGGCTGTTGCCAATTCTTCCGCAGAGAGCCCCTTCGAAGTTGATTCAGAAGCTACTGTAGCCCCGTTCTCATCTTTTGCTGACTACTTCCATAAAAAGTACGGGATTGTTTTAGTGTATCCTGGACAGCCTTTGTTGCTACTGAAGCAAAGCCATAACGCATACAATCTTCTCGTGGATTTTAAAAAGGAAGGTATTTCATGTGGACCGAAATCAAAAGATAGTACAATGGTGGTTAAAAAGCCACTGAATAATGTTCATATGCCACCAGAACTTCTGGTCTGTTTTGACATTCGGTTAGACATCTTGAAATCCTTCTACTTGCTACCATCATTAATGCACCGCCTGGCGTCCCTGATGTTGGCTAGCCAGTTGAGGAAAGATATATCAAGCCATTCAGGGGACTTACATATATCAAGCTCATTGATTCTGGAAGCTCTTACAACTCTCAGATGCAATGAGAGTTTCTCCATGGAACGTCTGGAGTTGCTTGGAGATTCTGTTCTGAAATATGCTGTTAGTTGTTACCTCTTCCTTAAATATCCCAAGAAGCATGAAGGGCAGCTAACTAATGAACGTTCACAGGCTATTAGTAACTCAGCCCTCCATAAATTGGGAACTAATCAACATTTGCAGGGTTATATACGGGATGGCGCATTTGATCCACGCCGATGGACTGCTCCTGGGCAGCTTTCCCTGTGGCTTTGTCCTTGTGAACACGGGGTTGAAACTTCACAAGTGCCTTTGGACAAGAAGTTTCTGACTGAAGATCCCAAAGAAGTAGTTGGGAAGCACTGTGATAGAGGACACAGATGGATGGGTTCAAAAACTATATCTGACTGTGTTGAAGCGTTAATAGGTGCATATTACGTTGGTGGTGGGTTTGTTGCTGCCCTCAAATTGATGAAATGGCTTGGTTTTAAAGCTGAGCTAGAACCTTCATTAGTAGAAGATGCGATCAATACTGCATCTCTTTATTCTTATACCCCTAAAGCTAAAGATATTGAAGACCTTGAGTTGAAGCTTGCTTATAAATTTTCTATTAAGGGACTGCTTTTAGAAGCTATAACACACGCTACTGTGCAAGAGCTGGAGGCTGGGTACAGTTATCAGAGGCTTGAATTTCTTGGCGACTCAGTACTGGACATTCTCGTTACCTGGTACCTTTACCAGAAGCACAAAGATATTGATCCTGGGGAACTAACAGATCTGCGTTCTGCTTCTGTCAATAATGATAATTTCGCTTATGCTGCTGTGAGAAGGAATCTTCATGTCCACCTTCAACATCATTCTGGATGTCTTGAAAGTGAAATATCATTATTTGTGAAGTCAGTCTCTAATTCCGATTCACTCCAAGGAAACAAAGCCCCAAAGGTACTTGGAGACTTGGTGGAGAGTATTGCTGGAGCAGTACTTATTGATACCAAGCTTAACCTGGATGAAGTTTGGAAGATCTTCAAGCCACTGTTGTCTCCCATCGTGACTCCTGATAAGCTTGAACTACCTCCATTCCGTGAGCTCATAGAATTATGTGACTCACTTGGCTACTTCTTTAAAGAACATTGTGTGATGAAGGGGGATACCGTAAATGCTGAGCTTAGGTTACAGCTGATAGATGATCTGCTGATCGCTGAGGGATCTGGGCAAACTAGAAAAAATGCAAAGGCGCAAGCAGCTCTGAAGTTACTGAAGAACTTAGAGAAAAAAGGAATTTCATTTAAGAAGAAAAAAGAAGAGGCCAGCTTTGTTGATGTGCCACAATCTTTAGACTTTGATGGTGACATCTGCATCCAAGCAAATACTTCTTGTCCTGATATGGCTTCACGCAAAAAGCGAAAGAAAGTATATTTGAATAATAAGACGGATGAAGCTCAATCTGTTCCCAGTGACTGCTCCACCAGTTCTAGCTATTCAAATAAGGACACCCAAGTAATTGGGCCAATCAACATGACAAGGGGTGGACCTCGCATATCACTCTTTGAACTATGCAAGAAACTGCAGTGGCCAATGCCTAGTTTTGAATCAACAGAGCGTACATCCAAATCACTTATTGAATGTGGTGAAGGCTCTGATAAAAGGAAGGTTTACAACACTTTTGCATCTCGAATCTCTCTGACAATACCTGACTATGGTTTGATAGAGCTTACCGGGGATGAAAGAGCTGATAAGAAAAGCTCACTTGATTCAGCAGCACTTCACATGTTATATGAGCTAGAACGACAGGGGAAAATAGCCATTGGAAATCAATGAATTATCATTAGTGTGAATTCTCACAATCTTGCTCTAAGGCGTAGAATTGTTAGCATATAGCCTTTTAGGTCTAGCCCTTCGCTAAGGGAATCCAGAAATTGCTGTGTATATTTGCATTGAAAAGTAGCAACAAACTTAGTAGTAGCGTATCAGGCGGGCATGGTTTCTGTTTCCAGCCATTATTGGAAATCCAATTGAAAATAGGGATGAACTTTTTGAAGTGTATAACGGGGATTGTTCTTATGTCCCTTATTTAAACCTTGATTTAACTTATCTATTGGGACTTCCTTCTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g067210.2.1SL2.50ch08:56225660..562536681,431+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g067210.2SL2.50ch08:56225661..5625396128,301+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g067210.2.1.1SL2.50ch08:56225661..56225786126+n/a
exonexon:Solyc08g067210.2.1.10SL2.50ch08:56236986..56237506521+n/a
exonexon:Solyc08g067210.2.1.11SL2.50ch08:56237605..5623769995+1
exonexon:Solyc08g067210.2.1.12SL2.50ch08:56241712..56241944233+2
exonexon:Solyc08g067210.2.1.13SL2.50ch08:56242022..56242231210+n/a
exonexon:Solyc08g067210.2.1.14SL2.50ch08:56242770..56243246477+n/a
exonexon:Solyc08g067210.2.1.15SL2.50ch08:56243382..56243642261+n/a
exonexon:Solyc08g067210.2.1.16SL2.50ch08:56248826..56249152327+n/a
exonexon:Solyc08g067210.2.1.17SL2.50ch08:56249853..56250081229+n/a
exonexon:Solyc08g067210.2.1.18SL2.50ch08:56253251..56253362112+2
exonexon:Solyc08g067210.2.1.19SL2.50ch08:56253461..56253961501+1
exonexon:Solyc08g067210.2.1.2SL2.50ch08:56226516..56226668153+n/a
exonexon:Solyc08g067210.2.1.3SL2.50ch08:56231243..56231372130+n/a
exonexon:Solyc08g067210.2.1.4SL2.50ch08:56232694..56232799106+2
exonexon:Solyc08g067210.2.1.5SL2.50ch08:56232905..56233097193+1
exonexon:Solyc08g067210.2.1.6SL2.50ch08:56233217..56233377161+n/a
exonexon:Solyc08g067210.2.1.7SL2.50ch08:56233461..56233679219+1
exonexon:Solyc08g067210.2.1.8SL2.50ch08:56235124..56235383260+1
exonexon:Solyc08g067210.2.1.9SL2.50ch08:56236615..56236886272+2
intronintron:Solyc08g067210.2.1.1SL2.50ch08:56225787..56226515n/a+n/a
intronintron:Solyc08g067210.2.1.10SL2.50ch08:56237507..56237604n/a+n/a
intronintron:Solyc08g067210.2.1.11SL2.50ch08:56237700..56241711n/a+n/a
intronintron:Solyc08g067210.2.1.12SL2.50ch08:56241945..56242021n/a+n/a
intronintron:Solyc08g067210.2.1.13SL2.50ch08:56242232..56242769n/a+n/a
intronintron:Solyc08g067210.2.1.14SL2.50ch08:56243247..56243381n/a+n/a
intronintron:Solyc08g067210.2.1.15SL2.50ch08:56243643..56248825n/a+n/a
intronintron:Solyc08g067210.2.1.16SL2.50ch08:56249153..56249852n/a+n/a
intronintron:Solyc08g067210.2.1.17SL2.50ch08:56250082..56253250n/a+n/a
intronintron:Solyc08g067210.2.1.18SL2.50ch08:56253363..56253460n/a+n/a
intronintron:Solyc08g067210.2.1.2SL2.50ch08:56226669..56231242n/a+n/a
intronintron:Solyc08g067210.2.1.3SL2.50ch08:56231373..56232693n/a+n/a
intronintron:Solyc08g067210.2.1.4SL2.50ch08:56232800..56232904n/a+n/a
intronintron:Solyc08g067210.2.1.5SL2.50ch08:56233098..56233216n/a+n/a
intronintron:Solyc08g067210.2.1.6SL2.50ch08:56233378..56233460n/a+n/a
intronintron:Solyc08g067210.2.1.7SL2.50ch08:56233680..56235123n/a+n/a
intronintron:Solyc08g067210.2.1.8SL2.50ch08:56235384..56236614n/a+n/a
intronintron:Solyc08g067210.2.1.9SL2.50ch08:56236887..56236985n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17904926%2Fdetails feature 17904926
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