Solanum lycopersicum mRNA Solyc08g076200.2.1

mRNA details  
Name
Solyc08g076200.2.1
Type
mRNA
Length
2,049
Organism
Solanum lycopersicum
Description
ATP dependent RNA helicase (AHRD V1 ***- B3LHE4_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch08:60216924..60225205
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
8282
Nb exon
13
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g076200.2.1 ATP dependent RNA helicase (AHRD V1 ***- B3LHE4_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

TTAGGGTTTTGCGATTTCGCCATAAATTTGAGCAGCCATGGTAGCAAAACAGTTAGATGACGAACCACAAACCCTCAACTATGAATCCAAATCTCACAAGAAACAGAAGAGAAAGCTTGAAGACGCTGAGGTTGAAGAAGTTGTTGTAGAATCCAAAAAAGAGAAAAAGAAGAAGAAGAAGCAGAAGCCGAAGCAAGAAGAAGATGGGTCCAATGGGAACACTGAAACTCTTGATGGGTCGAATGGAAATACTGAAATATTTGATGGGTCAGCTGAGTTATCGGAAAAGAAGAAGTCGAAGAAGGAGAAGAAGAGTAAGGTAAAGGAAGGGAATTTGGATGATGGGTCGGATGTTACTGTTGTTAATGGGAAGGTTAAAGAAAGTAGTACAAATGTGGTGGTTACGGGTAAGGGTGCTAATGAGTTAAAGTACAAAGCTTTAGAGAAGTTTGTGGATGCAGGGCTTCCAAGTGAGGTGTTGGAATGTTGTAAGAATTTTGAGAAACCATCACCAATTCAATCTCATTCATGGCCTTTTCTTTTAGATGGGCGTGATTTCATTGGCATAGCTAGAACTGGATCAGGTAAGACATTGGCTTTTGGTATTCCGGCTATTATGCACATCACGACTGAGCGGAAGAGTAAGAAGTCTAAGAATCCTGTTTGCCTTGTGCTTTCACCTACAAGAGAGTTAGCTCAACAAATATCAGATGTTCTCTGTGAGGCTGGGAAGCCTACTGGTGTGCAGTCAGTTTGTCTATATGGCGGAGTTGATAAGCACCATCAAAAGGCTTCTCTTAGATCTGGCGTGGATATTGTTATTGGAACCCCTGGTCGTTTGCAAGATCTGATGGAAATGGGAGCTTGCAATTTAAAAGAGGTTTCTTTTGTGGTGCTAGATGAAGCTGATCGCATGCTTGATTTAGGTTTTGAACCAGCGGTCCGTGCCATATTAAGCCAAACATGCTCTGTTCGGCAGATGGTTATGTTCAGTGCTACATGGCCTCCGGAAGTTCATCAATTAGCTCAAGAGTTCATGGATCCCAATCCAATCAAGGTAGTTGTAGGTTCAGAAGATTTGGCTGCCAACCATGATGTCATGCAAATTGTTGAGGTCTTGGAAGATCGAGCACGGGATGAGCGTTTACAATGTTTGCTGGAAAAATACCACAAGTCTAGAAGGAATAGAGTATTGGTGTTTGTTTTATACAAGAAGGAAGCATCTCGTGTAGAAATTATGCTACAGAAAAGGGGTTGGAAAGTTGTCTCTATAAGTGGTGACAAGCAACAACATGCTCGTACTAAGGCCCTGTCACTCTTCAAGGATGGAAGCTGTCCTCTACTGATAGCTACTGATGTAGCTGCTCGAGGGCTTGATATACCTGATGTTGAAGTTGTGATAAATTATAGCTTCCCTTTGACAACAGAGGATTATGTTCATAGAATTGGAAGAACTGGAAGGGCTGGTAAAAAAGGTGTAGCTCATACATTCTTCACTAAAGATAACAAGGGACTTTCTGGGGAGTTGATAAATGTCCTCAGAGAAGCTGGACAGACTGTTCCAGCTGCCCTTCTTAACTTTGGAACCCATGTAAAGAAAAAGGAGTCCAAGCTCTATGGTGCTCATTTTAGAGAAATTGACGCAAATGCTCCAAAGGCCACCAAAATAAAATTTGGTGATTCTGATAATGAAGATTGAGAAAACGAATATCAATTGTGCCAGTTTGTCATTGAGTTGTAGCAGCAGTGTAGCACAACTCCTTTGAATTGGTTCCAAGCTTCACCGTCCTGACACTACAGAATCATTTGGTGGATACACGCAGTAGTGGATCGTTGTGAGAAGAGTGCAAGAGATGATGTCCCACAGCTATGTGCTCATGTCTAAATTTATTGCACTGCAGTGTTCTAGATAATAGTGTTTTAGAATCTTACTATTCTTTTATGTAATTCGTTTCATTACCAGAATACAAATGTTAACTCTTAAATGACTGATTGTATATTTATTGCACCTTACAATTGCTGGAGATGGGATTCTGTGCTATAAGTTTA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g076200.2.1SL2.50ch08:60217273..60225168554-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g076200.2SL2.50ch08:60216924..602252058,282-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g076200.2.1.1SL2.50ch08:60224622..60225205584-2
exonexon:Solyc08g076200.2.1.10SL2.50ch08:60219609..6021970294-n/a
exonexon:Solyc08g076200.2.1.11SL2.50ch08:60218858..60219022165-n/a
exonexon:Solyc08g076200.2.1.12SL2.50ch08:60218659..6021875193-n/a
exonexon:Solyc08g076200.2.1.13SL2.50ch08:60216924..60217369446-n/a
exonexon:Solyc08g076200.2.1.2SL2.50ch08:60224415..60224533119-n/a
exonexon:Solyc08g076200.2.1.3SL2.50ch08:60223115..60223222108-n/a
exonexon:Solyc08g076200.2.1.4SL2.50ch08:60222753..6022283381-n/a
exonexon:Solyc08g076200.2.1.5SL2.50ch08:60221807..6022188579-2
exonexon:Solyc08g076200.2.1.6SL2.50ch08:60221222..6022130786-n/a
exonexon:Solyc08g076200.2.1.7SL2.50ch08:60221089..6022114557-n/a
exonexon:Solyc08g076200.2.1.8SL2.50ch08:60220823..6022089068-1
exonexon:Solyc08g076200.2.1.9SL2.50ch08:60219886..6021995469-1
intronintron:Solyc08g076200.2.1.10SL2.50ch08:60219703..60219885n/a-n/a
intronintron:Solyc08g076200.2.1.11SL2.50ch08:60219023..60219608n/a-n/a
intronintron:Solyc08g076200.2.1.12SL2.50ch08:60218752..60218857n/a-n/a
intronintron:Solyc08g076200.2.1.13SL2.50ch08:60217370..60218658n/a-n/a
intronintron:Solyc08g076200.2.1.2SL2.50ch08:60224534..60224621n/a-n/a
intronintron:Solyc08g076200.2.1.3SL2.50ch08:60223223..60224414n/a-n/a
intronintron:Solyc08g076200.2.1.4SL2.50ch08:60222834..60223114n/a-n/a
intronintron:Solyc08g076200.2.1.5SL2.50ch08:60221886..60222752n/a-n/a
intronintron:Solyc08g076200.2.1.6SL2.50ch08:60221308..60221806n/a-n/a
intronintron:Solyc08g076200.2.1.7SL2.50ch08:60221146..60221221n/a-n/a
intronintron:Solyc08g076200.2.1.8SL2.50ch08:60220891..60221088n/a-n/a
intronintron:Solyc08g076200.2.1.9SL2.50ch08:60219955..60220822n/a-n/a
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http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17909436%2Fdetails feature 17909436
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