Solanum lycopersicum mRNA Solyc08g076390.2.1

mRNA details  
Name
Solyc08g076390.2.1
Type
mRNA
Length
2,938
Organism
Solanum lycopersicum
Description
Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji
Location(s)
SL2.50ch08:60400162..60405967
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005634
Length
5806
Nb exon
11
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g076390.2.1 Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji

ATGGTGGAAGGGAGAGTCTGCATGTCGAGGGAGGCTAAATTGGAATTTTTGAAGCGAAAGAGGCTTCAACGAATGAAAACAGAATCTTTGAATGATCTTTCTTGTGTCAGCAATATGCTGAGTAGAAGCGGAGGAGATGCCCTACGATCTTCTGCTTCATGTGGTGTTAGAATCCAGGTTAATACTGATTCATATCCAGGATCTGGGGCTTCTTTTAATGGAAAGGATAATTTCTCAAAGCACAAGGTAGCAAAGTTTGACACTTCCAATCTGGACTGGATCGATAAAATTCCAGAATGTCCAGTATACTGTCCAACTAAAGAGGAGTTTGAGGATCCCTTAGTTTATCTCCAGAAGTTAGCTCCCGAAGCTTCTAAATATGGTATATGCAAGATTGTTGCCCCTATAACTGCTTCTGTTCCTGCTGGAGTTGTTTTGATGAAAGAGAAGGCTGGTTTTAAATTTACTACTAGGGTACAGCCACTTCGGCTAGCCGAATGGGACACGGATGACAAGGTCACCTTTTTCATGAGTGGAAGGAACTATTCATTCAGAGATTTCGAGAAAATGGCGAACAAGGTATTTTCTCGTCGATATTATAGTGCTGGATGCCTTCCTCCTACATACTTGGAAAAAGAATTTTGGCATGAAATAGCTTGTGGAAAGACTGATAGTGTAGAATATGCCTGTGATGTTGATGGTAGTGCGTTCTCATCTTCTCCAAATGATCAGCTCGGAAAAAGCAAATGGAATTTGAAGGAACTTTCTCGGTTGCCTAAATCAGTACTGCGGCTCCTCGAAAAATCAATCCCGGGAGTTACTGAACCTATGTTGTATATTGGAATGCTATTTAGTATGTTTGCTTGGCATGTGGAAGACCACTACTTATATAGTATCAATTATCAGCACTGTGGGGCAGCAAAAACGTGGTACGGTATTCCAGGTCATGCAGCACTTGACTTTGAGAAGGTCGTCCGGGAGCATGTGTACACCAATGATATCTTATCAGCTGATGGAGAGGATGGAGCTTTTGATGTGCTTTTGGGGAAGACAACACTGTTTCCTCCAAATATTTTGTCAGAGCATGGTGTACCTGTGTATAGAGCTGTTCAAAAGCCCGGCGAATTCGTAGTAACTTTTCCTAGAGCGTATCATGCAGGATTTAGTCATGGTTTTAATTGTGGTGAGGCAGTTAACTTTGCAACTGGCGATTGGTTTCCTATGGGTTCAATTTCTAGCCGTCGCTATGCACTTTTGAACAGGGTGCCCTTACTTCCCCATGAGGAACTTCTCTGCAAAGAAGCAATGCTTCTGTGTACGAGTTTGAAACTGGAAGATCCTGACTATTCCTCTTCAGACTTGATCACTCATCGTAGCATCAAAGTTTCTTTTTTGAATTTGATGAGGTTTCAGCATCGTGCTCGTTGGTGCCTCGCAAGGTTAAAAGCATTTTCATGCATATCTTTATTCACACATGGTACCATTCTTTGCAGCATATGCAAGCGTGATTGTTATGTAGCTTACCTTAACTGCAACTGCTATGCACATGCAGTGTGCCTTCGCCATGAACCTAGGTCACTTGATTTTCCTTGCGGCAGCAATAGAACCCTTTGCCTAAGGGAAGATATTTTGGACATGGAAACTGCAGCTAGACAGTTTGAGCAGGATAAGGTAGTTCTGCATGAAGTTCAACAGCAACACAGAAAAACTGATGACTTTTCTAAACTTTTAAAAATGTTTCCACGAGCCGAGGATGATGGTTATGTTCCATATTGTGAAATCAATTTTGAATGGCCAGAGGACTCAGTTGAACAAACAATTTATGAGGAAGCACCAAATGGTTCTGGTCCTGTTGTGTCTGATCTCAACTCTTCAATGGAGCCAAAAGATTATCTTTCAACTGGTGTTAATGTACAGGGAAATGCTAACTGTAACTTAGGGGATAGTTCATCAATGAAGCTCCATGGTGATGTTTTTAGTTGTGGGAGTGAAAGATCGGAGATTTCATCAAGTGCTAGCAGTAAAGTCCATCAGAAAGTAGCTCAAGAGACGGATTGTAGAACTATTATAGATCAAGACAGTGATGAGTCTGATACAGAGGTTTTCAGAGTGAAGAGACGTCCTCGAGCAGAACATAGAAGTGTACATGATTCAATGTCTATCAACGTTGAAAATCAGAGTTTTAAAAGATTAAAGAAACATCAATCAGGACGATTGGGGTCATTGTGTTTGCCAGAGCATTCCTCGACTTGTGATATAAATCATAGGTCCGTTGCTATTTCAAGCCAATCGAAGGAAGCATTGGACTTCCATCCCAGAGACAAGTCAGTGAGAGGTGGTACAGTTCCAGTCTGTATTAAGTTGAAGAAAGGGGTTGGTTATGAACAAGATGAGCACAAGAGAGATGATAGGTTACCGTTTGAATTGGGGCAGAGTAAGAGGAGGGAACCAGGGAGAACAGAGAGTGGGTCGAAGCGTTTGAAAGTCAGAGGTCCTTCAGTTTTAGGGTTTGGAGGTCGGATGGATGGATTGAATAGATAGGTAACTGAAAAAGTAAAGGAGCATCGACTTTGCTAACACACAGATATTCTCTAACAACACGATAAAGAAAGGTAAGCATTAGATTAAAGAAGAGTTCTTTGTGCAGGCCTCTAAAGTTGGGGCAAGTAGCACAGTGGTGATTGTTATTGTTCTTTGTCCAGGGAGGAGAACCTCTCTCCTTGTTATTCCACTGCAGATAGATAGTAGGTGAATTCTCTCATGTACATTTTTATTTTTAACAAGTTGATCCAATTCTTGTGAGGTGCAAATGGGTATTCCCAAATAGCCCTCTGATTTAATGTCAAGCCTGTTGCCTTCTCCCTAGTTTAGGGTTCATTATTCTTTTGTAGCTACATGTCCTTTTTTGGCTTGAAACTACATGAATAAATACATAGCA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g076390.2.1SL2.50ch08:60400161..60405570847+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g076390.2SL2.50ch08:60400162..604059675,806+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g076390.2.1.1SL2.50ch08:60400162..604001643+n/a
exonexon:Solyc08g076390.2.1.10SL2.50ch08:60404514..60404780267+n/a
exonexon:Solyc08g076390.2.1.11SL2.50ch08:60405208..60405967760+n/a
exonexon:Solyc08g076390.2.1.2SL2.50ch08:60401397..60401775379+n/a
exonexon:Solyc08g076390.2.1.3SL2.50ch08:60402052..60402208157+2
exonexon:Solyc08g076390.2.1.4SL2.50ch08:60402286..60402505220+1
exonexon:Solyc08g076390.2.1.5SL2.50ch08:60402798..6040285154+n/a
exonexon:Solyc08g076390.2.1.6SL2.50ch08:60402948..6040302780+n/a
exonexon:Solyc08g076390.2.1.7SL2.50ch08:60403102..60403379278+1
exonexon:Solyc08g076390.2.1.8SL2.50ch08:60403566..60403961396+2
exonexon:Solyc08g076390.2.1.9SL2.50ch08:60404058..60404401344+2
intronintron:Solyc08g076390.2.1.1SL2.50ch08:60400165..60401396n/a+n/a
intronintron:Solyc08g076390.2.1.10SL2.50ch08:60404781..60405207n/a+n/a
intronintron:Solyc08g076390.2.1.2SL2.50ch08:60401776..60402051n/a+n/a
intronintron:Solyc08g076390.2.1.3SL2.50ch08:60402209..60402285n/a+n/a
intronintron:Solyc08g076390.2.1.4SL2.50ch08:60402506..60402797n/a+n/a
intronintron:Solyc08g076390.2.1.5SL2.50ch08:60402852..60402947n/a+n/a
intronintron:Solyc08g076390.2.1.6SL2.50ch08:60403028..60403101n/a+n/a
intronintron:Solyc08g076390.2.1.7SL2.50ch08:60403380..60403565n/a+n/a
intronintron:Solyc08g076390.2.1.8SL2.50ch08:60403962..60404057n/a+n/a
intronintron:Solyc08g076390.2.1.9SL2.50ch08:60404402..60404513n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17909643%2Fdetails feature 17909643
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