Solanum lycopersicum mRNA Solyc09g008670.2.1

mRNA details  
Name
Solyc09g008670.2.1
Type
mRNA
Length
2,088
Organism
Solanum lycopersicum
Description
Threonine ammonia-lyase biosynthetic (AHRD V1 **** B1XNT1_SYNP2); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I
Location(s)
SL2.50ch09:2123840..2127943
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008152
  • GO:0006520
  • GO:0009097
Length
4104
Nb exon
9
Sifter term
GO:0004794
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc09g008670.2.1 Threonine ammonia-lyase biosynthetic (AHRD V1 **** B1XNT1_SYNP2); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I

ATCATATCATTAAAAAAATATTATATTTCTCTCTACTGAACAAAGTTTTCGATTTAATCAGTATTATAAGTTGCAATAAAAATGGAATTCCTTTGTTTAGCCCCAACACGTAGTTTTTCCACCAATCCCAAATTAACAAAAAGTATTCCTAGCGATCATACTAGTACCACGAGTCGTATTTTCACATACCAAAACATGCGTGGCTCAACGATGAGACCATTAGCGTTGCCGTTAAAAATGTCACCAATTGTTTCTGTGCCGGATATTACAGCTCCGGTGGAAAATGTTCCGGCTATCTTGCCAAAAGTCGTTCCCGGAGAGTTGATAGTGAATAAACCAACGGGGGGCGATAGCGATGAATTGTTTCAATATTTAGTTGATATTTTGGCATCGCCAGTGTATGATGTAGCGATCGAATCGCCATTAGAGCTAGCAGAGAAGCTCTCGGATAGGCTCGGAGTTAATTTTTATATCAAAAGAGAAGATAAACAGAGGGTGTTTTCATTCAAGCTTAGAGGAGCTTACAACATGATGAGTAACCTCTCAAGGGAGGAATTAGATAAAGGGGTTATAACAGCATCAGCTGGAAATCATGCACAAGGTGTAGCATTAGCTGGTCAAAGACTTAACTGTGTAGCTAAAATTGTCATGCCTACAACCACCCCACAAATCAAGATTGATGCGGTTAGAGCCCTGGGAGGTGATGTAGTTCTTTATGGTAAAACATTTGATGAAGCTCAAACACACGCGCTGGAATTGAGTGAAAAAGACGGGCTCAAATACATCCCACCATTCGATGATCCAGGAGTCATCAAAGGCCAAGGTACAATTGGAACAGAGATAAACCGTCAACTGAAGGACATTCACGCTGTGTTTATACCTGTTGGTGGTGGGGGTTTGATAGCTGGTGTTGCTACCTTTTTCAAACAAATTGCCCCAAATACAAAAATTATTGGAGTTGAGCCATATGGTGCAGCTTCAATGACATTGTCATTGCATGAAGGACATAGAGTGAAATTATCAAATGTTGATACTTTTGCTGACGGTGTAGCTGTTGCACTAGTTGGTGAATACACTTTTGCAAAATGCCAAGAGTTAATTGATGGAATGGTACTTGTTGCAAATGATGGTATTAGTGCTGCAATAAAGGATGTGTATGATGAAGGAAGGAACATATTAGAGACATCAGGTGCAGTGGCCATAGCTGGAGCTGCAGCCTATTGTGAATTTTATAAAATAAAAAATGAAAATATTGTAGCAATTGCAAGTGGAGCTAATATGGATTTCAGCAAACTACACAAAGTTACAGAGTTAGCAGGGTTAGGTTCAGGCAAAGAGGCTTTATTGGCTACTTTTATGGTAGAACAACAAGGAAGCTTCAAGACATTTGTTGGACTTGTGGGCTCTTTGAATTTTACTGAATTGACATACAGATTCACTTCTGAAAGGAAAAATGCTCTAATTTTGTACAGGGTTAATGTTGATAAAGAATCAGATCTTGAAAAAATGATTGAGGATATGAAATCATCAAATATGACTACTCTTAATCTCTCACATAATGAATTGGTTGTAGACCATCTAAAACATTTGGTTGGTGGCTCAGCAAATATCAGTGATGAAATTTTCGGTGAATTTATTGTACCTGAGAAGGCTGAAACTTTAAAAACATTCTTAGACGCTTTCTCCCCTCGTTGGAATATAACTTTATGCCGTTACCGTAATCAGGGAGATATAAATGCAAGTTTGTTGATGGGATTCCAAGTTCCTCAAGCTGAGATGGATGAGTTCAAAAATCAAGCTGATAAGCTTGGTTATCCATATGAACTTGATAATTATAATGAGGCTTTTAACCTTGTAGTAAGTGAGTGAAGAAATAAAAAATTTGTTGTTCTAAGTTTAAATTATTGAAAATCCTAAAAAAAATAAAATAATAATCGTGTCGTACCAATCTACTTAGTAAGGAATAATTGATGAATTAACTTGTTATAAGTTAATTTCATATTGTATGAATAATAAGATGCATGTATCCAATGTAATGTAATGGCTTTTTAAGTTTCATTAAGAAATAATTTATTATTGTCAATTACT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc09g008670.2.1SL2.50ch09:2123920..2127724596+n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc09g008670.2SL2.50ch09:2123840..21279434,104+n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc09g008670.2.1.1SL2.50ch09:2123840..2124334495+n/a
exonexon:Solyc09g008670.2.1.2SL2.50ch09:2124911..2125090180+n/a
exonexon:Solyc09g008670.2.1.3SL2.50ch09:2125264..2125411148+n/a
exonexon:Solyc09g008670.2.1.4SL2.50ch09:2125698..2126023326+n/a
exonexon:Solyc09g008670.2.1.5SL2.50ch09:2126160..2126408249+2
exonexon:Solyc09g008670.2.1.6SL2.50ch09:2126971..212704474+n/a
exonexon:Solyc09g008670.2.1.7SL2.50ch09:2127143..2127260118+n/a
exonexon:Solyc09g008670.2.1.8SL2.50ch09:2127361..2127495135+1
exonexon:Solyc09g008670.2.1.9SL2.50ch09:2127581..2127943363+n/a
intronintron:Solyc09g008670.2.1.1SL2.50ch09:2124335..2124910n/a+n/a
intronintron:Solyc09g008670.2.1.2SL2.50ch09:2125091..2125263n/a+n/a
intronintron:Solyc09g008670.2.1.3SL2.50ch09:2125412..2125697n/a+n/a
intronintron:Solyc09g008670.2.1.4SL2.50ch09:2126024..2126159n/a+n/a
intronintron:Solyc09g008670.2.1.5SL2.50ch09:2126409..2126970n/a+n/a
intronintron:Solyc09g008670.2.1.6SL2.50ch09:2127045..2127142n/a+n/a
intronintron:Solyc09g008670.2.1.7SL2.50ch09:2127261..2127360n/a+n/a
intronintron:Solyc09g008670.2.1.8SL2.50ch09:2127496..2127580n/a+n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17920702%2Fdetails feature 17920702
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)