Solanum lycopersicum mRNA Solyc09g010870.2.1
 mRNA details
|
| Name | Type |
Length
2,718
|
Organism |
|
Description
Exoribonuclease R/ribonuclease II (AHRD V1 **-* A5GLA4_SYNPW); contains Interpro domain(s) IPR001900 Ribonuclease II and R
|
|
Location(s)
SL2.50ch09:4200163..4209478
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0004540
- Length
- 9316
- Nb exon
- 14
- Sifter term
- GO:0000175
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc09g010870.2.1 Exoribonuclease R/ribonuclease II (AHRD V1 **-* A5GLA4_SYNPW); contains Interpro domain(s) IPR001900 Ribonuclease II and R
AAAGCCTCTTCTAAAACCAAATCCCCAATTGCTTATACACACATGACATCTCAAACTATCTCAACCACCAATTTCTAGCTCCCGACCACACACCATGGCGGTTCGCGCCATGAACAGCTGCGTAATTTTCCGTTCCGCCGCTACGCCGCCGCTCGCCGTCTCCCGCCGGTGCTGCTGTGTCCGTCAATTAACAGCTTTTTCTCGACATAGAAACCGTTCGAATTCACATTCATTTCTCCGTTGTGTGCCTTATCCTCTCAGCCATGTCACCGTTCGGAACTATTCAGTTCAAAACCTCGTCGAAATGGTTATGGAAGAGCTTGCTTCGATACACAAACGTGGCAGAGTTCGTGCTACTAGCGAGCTGGAATCAGTAAGCACAGGAGAGCTGCTTGAGGACAAGTTGAAGAAAGGGACACTACAAAAAGGATTGTTGCTGGAGTTCAAGAAGGATTCTGAAAGGTTGTTGCTAGCAGTTGCTCTTAAACCTGATGGAAAAAAGAATTGGATGGTCTCTGATCAGAATGGGATTACAACCTCTATTAAGCCACAGCAAGTGACTTTTATTGTTCCTGGTGCTGAAAATTTTGAGCCCACAGAAATATCAGAATTTGTACAGAAAGCTCATGATAACTTGGATCCAGCACTGCTTGAATTTGCATGGAATGAGCTACTTGAGAAAAATGAATCAGTAACAGTTCAAGAACTAGCTGAGATGATTTTTGGTAGTGCGGAGCCTCTTGAGACCTATTGCGCCCACCTGCTGTTATCAAGAGATGAGGTGTACTTTGCAGTTCTGGAGTCAAAAGGTCTTTCTGTATATGGACCTCGGACTGCTAACCAGGTGGATGAACTTTTGCGAAGGAAGCTTGCTAAAGAGGCCTCAGAGAAGGAGTTTGAGGAACTTATACAGTTTCTACGATCTGCTAAACAAATGCCTCATTACGACAAACCCCCAAGATCTTCTTGGAAGGCTGAAGAGAAAACTTGGCACAAGATAGAGTCTCTTGAAGCTTTTGCCATTGATTCTTGCAAAAATGACGATCAAAAGAAAACAGCTGGGATGATTTTGAAGGCCATGGGACAGGCAAAGACTTCATCTGCAGCAGTGAATCTCCTCATAGATATTGGGTATTTTCCTGTACATGTAAATCTCGATTTGTTAAAGTTGAACCTCCCAACTGATCATCGGGATGAGATTATATCGGCCGCAGAGAGTCTTTTGTCTACATCGATTGACCTTGATGAGGCTGATAGAATAGACCTGACTTCCCTGAAGGTTTACGCGATTGATGTTGATGAGGCTGATGAGCTTGATGATGCATTGAGTGCCACAAGGTTGCAGGACGGCCGGATTAAACTTTGGATACATATTGCAGATCCTACTAGTTTAGTTCAGCCAGGAAGCATAATAGACAAGGATGCAAGAAGAAGAGGAACTTCAGTATTCTTGCCTACTGCAACATATCCAATGTTCCCTGAGAGGTTGGCCATGGAAGGCATGAGTCTGCAGCAAGGAAAGTTGTGTAATGCTGTTTCTGTGTCTGTTGTGCTGCGTTCTGATGGCAGCATTGCAGAATACTCGGTGGAAAACTCAATCATCAAACCGACATATATGTTGACATATGAGAGTGCTACGGAGCTCCTTCATTTGAATCTTGAAGAAGAGATTGAACTGAAAATTCTTTCTGAAGCAGCTGCACTCCGGTTAAGATGGCGTCGCGAACAGGGTGCTATAGACACAGCCACCATCGAAACACGAATAAAGGTGACTAATCCAGATCATCCAGAGCCGTCAATCAAGCTGTATGTTGAAAACCAGGCTGATGCAGCTATGAGGCTTGTTTCTGAGATGATGATACTCTGTGGGGAAGTTATAGCCACTTTTGGTTCTCATAACAACATCCCTTTACCATACCGTGGACAGCCTCAATCTAATATCGACGCTTCTGCATTTGCACACCTTCCAGAAGGACCCGTTAGGAGTGCTGCTATTGTTCGAACTATGCGTGCAGCTGAAATGGATTTCAGGAATCCTATACGCCATGGGGTGTTGGGACTTCCAGGCTATGTTCAGTTTACCTCCCCCATTAGAAGATATATGGATCTCGCAGCCCATTATCAGGTAAAGGCCTTCCTTTGTGGTGAACCTCTTCCTCTCTCAGCTGGGGAGCTAGAAGGCATTGCGTCTTCAGTAAACATGACAACCAGAGTTGTAAGGAGGCTCTCCAGCAGCAGTCTTCGGTATTGGATATTGGAATACTTGAGAAGGCAGCCGAAAGGGAAACGGTATCGTGCCCTGGTCCTTAGATTCATCAAAGACCGAATAGCCGCAATACTGTTGACGGAGATTGGAATTCAAGCTTCTTCGTGGGTGTCTATTGGTGTACAGATTGGTGATGAAGTAGATGTCCAAGTTGAAGAAGCTCATCCACGTGATGATATTCTCTCTCTTAAGGAGGTTGAGGCTGTATAGAATATTTGTTCGTGGAGACCAGAAAGCTTATGATGGAAACAAGCCTTCCTAACATTTTGTTGCAACAGTTAACGCAATAGTTCAGTTCCTCGTTCATGTGTTTAGATGACTTTTTCTAGTGAGGACTCAGGAACTTATAATGATTCTCACTTCAATGACAAGTCAATAGTTTATATACATGTTGGAGATACAACCACACAAGGGCAACGATGTTTCTTCTTGTTGTCTTCATTCGAGCTTTG
AAAGCCTCTTCTAAAACCAAATCCCCAATTGCTTATACACACATGACATCTCAAACTATCTCAACCACCAATTTCTAGCTCCCGACCACACACCATGGCGGTTCGCGCCATGAACAGCTGCGTAATTTTCCGTTCCGCCGCTACGCCGCCGCTCGCCGTCTCCCGCCGGTGCTGCTGTGTCCGTCAATTAACAGCTTTTTCTCGACATAGAAACCGTTCGAATTCACATTCATTTCTCCGTTGTGTGCCTTATCCTCTCAGCCATGTCACCGTTCGGAACTATTCAGTTCAAAACCTCGTCGAAATGGTTATGGAAGAGCTTGCTTCGATACACAAACGTGGCAGAGTTCGTGCTACTAGCGAGCTGGAATCAGTAAGCACAGGAGAGCTGCTTGAGGACAAGTTGAAGAAAGGGACACTACAAAAAGGATTGTTGCTGGAGTTCAAGAAGGATTCTGAAAGGTTGTTGCTAGCAGTTGCTCTTAAACCTGATGGAAAAAAGAATTGGATGGTCTCTGATCAGAATGGGATTACAACCTCTATTAAGCCACAGCAAGTGACTTTTATTGTTCCTGGTGCTGAAAATTTTGAGCCCACAGAAATATCAGAATTTGTACAGAAAGCTCATGATAACTTGGATCCAGCACTGCTTGAATTTGCATGGAATGAGCTACTTGAGAAAAATGAATCAGTAACAGTTCAAGAACTAGCTGAGATGATTTTTGGTAGTGCGGAGCCTCTTGAGACCTATTGCGCCCACCTGCTGTTATCAAGAGATGAGGTGTACTTTGCAGTTCTGGAGTCAAAAGGTCTTTCTGTATATGGACCTCGGACTGCTAACCAGGTGGATGAACTTTTGCGAAGGAAGCTTGCTAAAGAGGCCTCAGAGAAGGAGTTTGAGGAACTTATACAGTTTCTACGATCTGCTAAACAAATGCCTCATTACGACAAACCCCCAAGATCTTCTTGGAAGGCTGAAGAGAAAACTTGGCACAAGATAGAGTCTCTTGAAGCTTTTGCCATTGATTCTTGCAAAAATGACGATCAAAAGAAAACAGCTGGGATGATTTTGAAGGCCATGGGACAGGCAAAGACTTCATCTGCAGCAGTGAATCTCCTCATAGATATTGGGTATTTTCCTGTACATGTAAATCTCGATTTGTTAAAGTTGAACCTCCCAACTGATCATCGGGATGAGATTATATCGGCCGCAGAGAGTCTTTTGTCTACATCGATTGACCTTGATGAGGCTGATAGAATAGACCTGACTTCCCTGAAGGTTTACGCGATTGATGTTGATGAGGCTGATGAGCTTGATGATGCATTGAGTGCCACAAGGTTGCAGGACGGCCGGATTAAACTTTGGATACATATTGCAGATCCTACTAGTTTAGTTCAGCCAGGAAGCATAATAGACAAGGATGCAAGAAGAAGAGGAACTTCAGTATTCTTGCCTACTGCAACATATCCAATGTTCCCTGAGAGGTTGGCCATGGAAGGCATGAGTCTGCAGCAAGGAAAGTTGTGTAATGCTGTTTCTGTGTCTGTTGTGCTGCGTTCTGATGGCAGCATTGCAGAATACTCGGTGGAAAACTCAATCATCAAACCGACATATATGTTGACATATGAGAGTGCTACGGAGCTCCTTCATTTGAATCTTGAAGAAGAGATTGAACTGAAAATTCTTTCTGAAGCAGCTGCACTCCGGTTAAGATGGCGTCGCGAACAGGGTGCTATAGACACAGCCACCATCGAAACACGAATAAAGGTGACTAATCCAGATCATCCAGAGCCGTCAATCAAGCTGTATGTTGAAAACCAGGCTGATGCAGCTATGAGGCTTGTTTCTGAGATGATGATACTCTGTGGGGAAGTTATAGCCACTTTTGGTTCTCATAACAACATCCCTTTACCATACCGTGGACAGCCTCAATCTAATATCGACGCTTCTGCATTTGCACACCTTCCAGAAGGACCCGTTAGGAGTGCTGCTATTGTTCGAACTATGCGTGCAGCTGAAATGGATTTCAGGAATCCTATACGCCATGGGGTGTTGGGACTTCCAGGCTATGTTCAGTTTACCTCCCCCATTAGAAGATATATGGATCTCGCAGCCCATTATCAGGTAAAGGCCTTCCTTTGTGGTGAACCTCTTCCTCTCTCAGCTGGGGAGCTAGAAGGCATTGCGTCTTCAGTAAACATGACAACCAGAGTTGTAAGGAGGCTCTCCAGCAGCAGTCTTCGGTATTGGATATTGGAATACTTGAGAAGGCAGCCGAAAGGGAAACGGTATCGTGCCCTGGTCCTTAGATTCATCAAAGACCGAATAGCCGCAATACTGTTGACGGAGATTGGAATTCAAGCTTCTTCGTGGGTGTCTATTGGTGTACAGATTGGTGATGAAGTAGATGTCCAAGTTGAAGAAGCTCATCCACGTGATGATATTCTCTCTCTTAAGGAGGTTGAGGCTGTATAGAATATTTGTTCGTGGAGACCAGAAAGCTTATGATGGAAACAAGCCTTCCTAACATTTTGTTGCAACAGTTAACGCAATAGTTCAGTTCCTCGTTCATGTGTTTAGATGACTTTTTCTAGTGAGGACTCAGGAACTTATAATGATTCTCACTTCAATGACAAGTCAATAGTTTATATACATGTTGGAGATACAACCACACAAGGGCAACGATGTTTCTTCTTGTTGTCTTCATTCGAGCTTTG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc09g010870.2.1 | SL2.50ch09:4200404..4209384 | 794 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc09g010870.2 | SL2.50ch09:4200163..4209478 | 9,316 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc09g010870.2.1.1 | SL2.50ch09:4209116..4209478 | 363 | - | 1 |
| exon | exon:Solyc09g010870.2.1.10 | SL2.50ch09:4204255..4204404 | 150 | - | 1 |
| exon | exon:Solyc09g010870.2.1.11 | SL2.50ch09:4203732..4203891 | 160 | - | n/a |
| exon | exon:Solyc09g010870.2.1.12 | SL2.50ch09:4202444..4202839 | 396 | - | n/a |
| exon | exon:Solyc09g010870.2.1.13 | SL2.50ch09:4201820..4202044 | 225 | - | n/a |
| exon | exon:Solyc09g010870.2.1.14 | SL2.50ch09:4200163..4200530 | 368 | - | n/a |
| exon | exon:Solyc09g010870.2.1.2 | SL2.50ch09:4208351..4208510 | 160 | - | n/a |
| exon | exon:Solyc09g010870.2.1.3 | SL2.50ch09:4208130..4208243 | 114 | - | n/a |
| exon | exon:Solyc09g010870.2.1.4 | SL2.50ch09:4207936..4208013 | 78 | - | n/a |
| exon | exon:Solyc09g010870.2.1.5 | SL2.50ch09:4207739..4207867 | 129 | - | n/a |
| exon | exon:Solyc09g010870.2.1.6 | SL2.50ch09:4206338..4206559 | 222 | - | n/a |
| exon | exon:Solyc09g010870.2.1.7 | SL2.50ch09:4205892..4206074 | 183 | - | n/a |
| exon | exon:Solyc09g010870.2.1.8 | SL2.50ch09:4204714..4204776 | 63 | - | n/a |
| exon | exon:Solyc09g010870.2.1.9 | SL2.50ch09:4204483..4204589 | 107 | - | 1 |
| intron | intron:Solyc09g010870.2.1.10 | SL2.50ch09:4204405..4204482 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.11 | SL2.50ch09:4203892..4204254 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.12 | SL2.50ch09:4202840..4203731 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.13 | SL2.50ch09:4202045..4202443 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.14 | SL2.50ch09:4200531..4201819 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.2 | SL2.50ch09:4208511..4209115 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.3 | SL2.50ch09:4208244..4208350 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.4 | SL2.50ch09:4208014..4208129 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.5 | SL2.50ch09:4207868..4207935 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.6 | SL2.50ch09:4206560..4207738 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.7 | SL2.50ch09:4206075..4206337 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.8 | SL2.50ch09:4204777..4205891 | n/a | - | n/a |
| intron | intron:Solyc09g010870.2.1.9 | SL2.50ch09:4204590..4204713 | n/a | - | n/a |
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