Sol Genomics Network

Solanum lycopersicum gene Solyc09g055940.2

Name Solyc09g055940.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc09g055940	Length 2,513

Description

Bile acid sodium symporter family protein (AHRD V1 **** D7L6U2_ARALY); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter

Location(s)

SL2.50ch09:46247408..46249920

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2513

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc09g055940.2.1	SL2.50ch09:46247408..46249920	1,646	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc09g055940.2 SL2.50ch09:46249920..46247408 (sequence from reverse strand)
TGAGCGTAAACACCATAAAAAAGTTTTCCTGTATAAAACTCTCTTGTCATCTCTTCAGCGCTTTGCTCCTCCTCTCCTTTTTTTTTCCTCCTCGCCGGAGAAGCAGTCAATTTTTTCCGGCGATCGGGATAAATTATATTCACCGGAGAGCTATTTCTTTGATTCTCAGAATGTCAACAACTCCATTTTTATCCGTCAAGTACCCAAAACCTTTTCTTTCTATCCCTAATTCAATTTTCCATGGTAAGAGTACTTTTTCTGTAAGGTATCCAGTTCTACCAGGGTTTAATGGATGCGCTGTTGCATGTTTGACTTCGTCTCCGTTAACTGGGAGAGTGGGTTTGCAGAGACGGGAAGGCAACTTGTCGTTACTTTCGTTTGGTGCTAATCCGAAAAGCTTTTATGTAGCAGAAGATGATGAAAAGGTGGATTATTCACAAGTACTTTCTGCATTGCTTCCTTTTGTTGTGGCCATCACTGCTGTTGCTGCTCTTTCTCACCCTTCAACTTTCACATGGTAACCATATCTTCATTCAACTCTAAACTCAATAATTTAAATCACAAGTTTCCGGTTTAATTTTAAAACAATTGCTATTTACATCGAATTTCGTTCTACATATGTTCGCAAATTCCCTTCACTTATGGGTATAATCTTTTGTTTTTTTGAATACAACATTTGTATATTGTTTTCTTGTATAATTGATAGAGGAATATGCAGGGTTTCTAAAGATTTGTATGCTCCTGCACTTGGAGGAATCATGTTATCAATTGGTATTAAACTTTCTATTGATGATTTTGCTCTTGCGATTAAAAGGTAAGCCCAATTTACTAGTTTTATGGACTTGATCACTAGTAAAGTAGTTGGTGTTTTCGTTGTAAAGCTTTTGACCTTTGCTGATTGCAGACCTTTTCCCTTATCAGTTGGATTCGTTGCTCAATATGTCCTGAAGCCAGCTCTTGGTTTGTTGTTAGCACAGGCATTTGGAATGCCTACAACGTTCTACGCTGGTTTTGTCCTTGTGTCTTGTGTTGCAGGGGCTCAATTATCAAGTTACGCCAGCTTCTTGAGCAAAAGTGATGTGGCATTCAGTATTCTCTTGACCAGTACAAGTACTATTGCTTCAGTTCTTGTTACTCCACTTTTAACTGGCCTTCTTATTGGTTCAGTCGTTCCAGTTGATGCAGTTGCAATGGCAAAGTCAATCTTACAGGTATCAGATGTCCCAACTCTATTGCTGCTTGATAATTAGCAGAATTGTAGTATGTCAAACAGTACTGATGAAAGGCTTTTTATATCATAATATATCAGTTGTTTACATCACAATGAGTCCATATACATTTACTGTCTTTGCAGGTTGTTCTTCTCCCCGTCGCTCTTGGCTTAGTGCTGAACACCTATGCCAAACCAGTAGTATCTGTTATTCAACCTGTGATGCCATTTGTTGCCATGATTTGTACTTCACTGTGTATTGGCAGCCCTCTTGCAATCAATCGCGCTCAGATTCTTTCTGCTGAGGGTGCAAAATTGATCGCTCCCGTACTGACATTTCATGGAATGGCATTTGCGTTGGGATATTGGCTCTCAAAACTTCCAATTTTGAGGTTTTGGCTAGTCTCTTGTAGCTGCACCTGTTTTATGTGATGAAATGCATTTGTGGTTCAAGCACTGTACTTGTGACACATTTTCCGTCATGTTGATAATTGCTTTCCTGTTCTTAGATTATGTGATACTCATCAATGGGTATCACATAAATTGAACTATCCAAACTGGTCCCGTCATAGTGATGCAAGAGTCTTGTCAAATTGCTCCTATTGACATTCACATTAAATGACCTGTCCAATTTTGGGTCGAATATATGTCAATTAATGGGTGATTAAATATCATATTTGGATTCTTCATGAAAGTTAATAATGTTCAACTCTTGCTTCTGAATACCATCTTTAATTGCTTCAATTTGTTGCCGTCTGTGGGCTTGAAGAGAACTGGTGGTGTTCTTTTTCATCTACTCTGATCTCATTGCATATACAATGGCAGGTTTGAAGAAGAAATGTGCAGGACAATTTCTTTATGCACAGGAATGCAGAGCTCTACACTGGCGGGGTTACTTGCAACTCAATTCCTTGGAAGCAGTCAAGCGGTACCACCTGCATGTTCTGTTGTTGCAATGGCTATAATGGGCCTTTGTCTTGCCTCATTTTGGGGCAGTGGATACCGGATCAGGGACATTCCATCCATTCTGTTTCCATCAAATGCTTCGACTATCAAGCCTTCACTGTAAGCTAGAGATTGGTATATAGAGAATAGGATACTTAGTAGAAAGGTAGATGTCCTTTCAGGATTAGGCAAATTAATTAACTTAAATGCAGTAGAATGGCTAAATGAGATGGGGGCATATAATATATATATATATATATAATATATACTACAATGACCTTTGAAAGTATGTATGAAATCTGATAAAGAGGTAGATGAGATAGTATTGTAACTGGTAAAGTGAAGGGCTTGAAGCTGA

Download sequence region

Download sequence (2.5Kb)

Get flanking sequences on SL2.50ch09

mRNA Solyc09g055940.2.1

Ontology terms

terms associated with this mRNA

GO:0015370 – solute:sodium symporter activity

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc09g055940.2.1	SL2.50ch09:46247641..46249750	414	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc09g055940.2	SL2.50ch09:46247408..46249920	2,513	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc09g055940.2.1.1	SL2.50ch09:46249404..46249920	517	-	1
exon	exon:Solyc09g055940.2.1.2	SL2.50ch09:46249107..46249202	96	-	1
exon	exon:Solyc09g055940.2.1.3	SL2.50ch09:46248710..46249016	307	-	n/a
exon	exon:Solyc09g055940.2.1.4	SL2.50ch09:46248319..46248566	248	-	1
exon	exon:Solyc09g055940.2.1.5	SL2.50ch09:46247408..46247885	478	-	n/a
intron	intron:Solyc09g055940.2.1.2	SL2.50ch09:46249203..46249403	n/a	-	n/a
intron	intron:Solyc09g055940.2.1.3	SL2.50ch09:46249017..46249106	n/a	-	n/a
intron	intron:Solyc09g055940.2.1.4	SL2.50ch09:46248567..46248709	n/a	-	n/a
intron	intron:Solyc09g055940.2.1.5	SL2.50ch09:46247886..46248318	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc09g055940

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17928796%2Fdetails feature 17928796

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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