Solanum lycopersicum mRNA Solyc10g038080.1.1

mRNA details  
Name
Solyc10g038080.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc10g038080.1.1
Length
1,545
  
Description
Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR001381 Dehydroquinase class I
Location(s)
SL2.50ch10:19475289..19484193
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008152
  • GO:0005737
  • GO:0003855
Length
8905
Nb exon
9
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc10g038080.1.1 Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR001381 Dehydroquinase class I

ATGGGTAGTGTTGGATTGTTGAAGAATTCCGCCATGGTTTGTGCTCCATTAATGGCGACATCAGTGGATCAATTAATTGATGAAATGGTTGAGGCTAAATCACAAGGTGCAGATTGTGTTGAGATTAGGCTTGATGCTATCCACAATTTCCAACCTCACAAACATCTTCAACTTCTCTTCAAAAATAAGCCACTCCCTATTCTCATTCTTTACAGGCCAATATGGGAAAGAAATGACTTTGAAGCTGATGCCCACAAACAATTGGAAGCCCTTCGGTTGGCTAAAGAATTGGGAGCTGATTATGTTGAGTTGGACCTCAAGATAGCTAGTGAGTTTGCAAAAAATGAAAAGTCGAGTTGGAGTAGTGGTTGTAAACTAATTACATCATGCTTCGTGGACAATGTGACCTCAAAAGAAGACCTCAGCCAAGTTGTTGCATCCATGCAATCTACTGGGGCAGATATCCTCAAAATTGTTATAAATGCAAATGACATTACAGAACTAGAGAAAACGTTTCACTTGCTTTCACATTGCCAGGTGCCGCTTATCGCCTACTCTGTTGGGGAAAGAGGTCTCATAAGTCAGCTGTTGGGCCCAAAATTCGGTAGTGTCCTATTATATGGATCTCTTGATGGTAATGCAGTGCCTGGTCTTCCTTCTCTTGCCAGCCTTAGACAAGCCTACGGAGTTGATTTGATGGATAATGATACTAAAGTTTTTGGGCTCATTTCTAAACCAGTGGGTCATAGTAAAGGACCTATTTTGCATAATCCAACGTTTAGACATGTGGGTTATAATGGAATTTATGTTCCAATGTTTGTGGATGATCTTAAGGAGTTCTTTAGGGTCTACTCAAGTCCCGACTTTGCTGGTTTCAGTGTTGGAATTCCATACAAGGAAGCAGTGGTGAGCTTTTGTGATGAAGTCGATCCATTGGCTGAGTCCATAGGGGCTGTAAATACCATCATACGGAGGCCTTGCGATGGGAAGTTAATTGGTTACAACACAGATTGTGAGGCTTCTATAACAGCCATCGAGGATGCTTTGAAAGCAAATGGAGAAGCTTTAGTTCCTTGTTCACTCGCTAGGAAAATGTTTGTGTTGGTGGGTGCTGGAGGTGCAGGAAGAGCTCTTGCATTCGGAGCCAAGAGCAGGGGAGCTCGAATTGTGATTTTTGACATTGATTTTGATAGAGCAAAAGCTCTTGCTGCCGCAGTTAGTGGTGAAGCTCTGCCATTTGAAAAATTAGCTTCTTTTCAGCCAGAGAAAGGTGCAATCCTTGCGAATGCAACACCTATAGGAATGCATCCAAATAAAGATAGGATACCTGTGCCTGAGGGAAGCTTAAAGGATTATGTAGTGGTGTTTGATGCTGTATATACACCACGAAGGACTACTCTACTGGAAGATGCGGAGGCTGCTGGAGCACTCATTGTAAGTGGAGTTGAAATGTTTCTTAGACAGGCTATAGGACAGTTCAACCTTTTCACAGGAAGTAAAGCACCAGAAGAATTCATGCGTGACATCGTTATGTCAAAATTCTAA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc10g038080.1.1SL2.50ch10:19475288..19484193515-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc10g038080.1SL2.50ch10:19475289..194841938,905-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc10g038080.1.1.1SL2.50ch10:19483979..19484193215-n/a
exonexon:Solyc10g038080.1.1.2SL2.50ch10:19481548..19481653106-1
exonexon:Solyc10g038080.1.1.3SL2.50ch10:19480936..19481151216-n/a
exonexon:Solyc10g038080.1.1.4SL2.50ch10:19480483..19480823341-n/a
exonexon:Solyc10g038080.1.1.5SL2.50ch10:19480294..1948035764-1
exonexon:Solyc10g038080.1.1.6SL2.50ch10:19476051..19476159109-n/a
exonexon:Solyc10g038080.1.1.7SL2.50ch10:19475684..19475970287-2
exonexon:Solyc10g038080.1.1.8SL2.50ch10:19475444..19475606163-n/a
exonexon:Solyc10g038080.1.1.9SL2.50ch10:19475289..1947533244-2
intronintron:Solyc10g038080.1.1.2SL2.50ch10:19481654..19483978n/a-n/a
intronintron:Solyc10g038080.1.1.3SL2.50ch10:19481152..19481547n/a-n/a
intronintron:Solyc10g038080.1.1.4SL2.50ch10:19480824..19480935n/a-n/a
intronintron:Solyc10g038080.1.1.5SL2.50ch10:19480358..19480482n/a-n/a
intronintron:Solyc10g038080.1.1.6SL2.50ch10:19476160..19480293n/a-n/a
intronintron:Solyc10g038080.1.1.7SL2.50ch10:19475971..19476050n/a-n/a
intronintron:Solyc10g038080.1.1.8SL2.50ch10:19475607..19475683n/a-n/a
intronintron:Solyc10g038080.1.1.9SL2.50ch10:19475333..19475443n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17950569%2Fdetails feature 17950569
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