Solanum lycopersicum mRNA Solyc10g055810.1.1
 mRNA details
|
| Name | Type | Organism | |
|
Synonyms / aliases
mRNA:Solyc10g055810.1.1
|
Length
969
|
| Description |
|
Location(s)
SL2.50ch10:57417284..57418434
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0005975
- GO:0008061
- GO:0016998
- Length
- 1151
- Sifter term
- GO:0008843
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc10g055810.1.1 Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 IPR018371 Chitin-binding, type 1, conserved site IPR000726 Glycoside hydrolase, family 19, catalytic IPR001002 Chitin-binding, type 1
ATGAGGCTTTCTGAATTCACTACTCTTTTCTTACTATTTTCTGTGCTTTTGCTGTCTGCCTCTGCAGAGCAATGTGGTTCACAGGCCGGAGGCGCACTTTGTGCATCCGGACTGTGTTGCAGTAAATTTGGTTGGTGTGGTAACACTAATGAGTATTGTGGTCCTGGTAATTGTCAGAGCCAGTGTCCTGGCGGTCCCGGTCCTTCAGGGGACCTAGGCGGTGTTATTTCAAATTCCATGTTTGATCAAATGCTTAATCATCGCAATGACAATGCTTGTCAAGGAAAGAATAATTTCTACAGTTACAATGCATTTGTTACTGCTGCTGGGTCTTTTCCTGGATTTGGTACTACTGGGGATATCACTGCCCGTAAAAGGGAAATTGCTGCTTTCCTTGCCCAAACTTCCCATGAAACTACTGGAGGATGGCCTACGGCACCAGATGGACCATACGCATGGGGTTACTGTTTCCTTAGAGAGCAAGGTAGCCCTGGCGATTACTGTACACCAAGTAGTCAATGGCCTTGTGCTCCTGGAAGGAAATATTTCGGACGAGGTCCAATTCAAATTTCACACAACTACAACTATGGGCCATGTGGAAGAGCCATTGGAGTGGACCTTTTGAACAATCCCGATCTAGTAGCAACAGACCCAGTCATCTCATTCAAATCAGCTATCTGGTTCTGGATGACTCCTCAATCCCCAAAGCCTTCTTGTCACGATGTCATCACCGGAAGATGGCAGCCATCTGGCGCTGACCAAGCAGCTAATCGCGTCCCTGGATTCGGTGTCATCACAAACATCATCAATGGTGGCCTGGAATGTGGTCACGGCAGTGACAGCAGGGTCCAGGATCGGATTGGATTTTACAGGAGGTATTGCGGAATTCTTGGAGTTAGCCCAGGTGAAAATCTTGATTGTGGCAATCAGAGGTCTTTTGGAAACGGACTATTAGTTGATATTATGTAA
ATGAGGCTTTCTGAATTCACTACTCTTTTCTTACTATTTTCTGTGCTTTTGCTGTCTGCCTCTGCAGAGCAATGTGGTTCACAGGCCGGAGGCGCACTTTGTGCATCCGGACTGTGTTGCAGTAAATTTGGTTGGTGTGGTAACACTAATGAGTATTGTGGTCCTGGTAATTGTCAGAGCCAGTGTCCTGGCGGTCCCGGTCCTTCAGGGGACCTAGGCGGTGTTATTTCAAATTCCATGTTTGATCAAATGCTTAATCATCGCAATGACAATGCTTGTCAAGGAAAGAATAATTTCTACAGTTACAATGCATTTGTTACTGCTGCTGGGTCTTTTCCTGGATTTGGTACTACTGGGGATATCACTGCCCGTAAAAGGGAAATTGCTGCTTTCCTTGCCCAAACTTCCCATGAAACTACTGGAGGATGGCCTACGGCACCAGATGGACCATACGCATGGGGTTACTGTTTCCTTAGAGAGCAAGGTAGCCCTGGCGATTACTGTACACCAAGTAGTCAATGGCCTTGTGCTCCTGGAAGGAAATATTTCGGACGAGGTCCAATTCAAATTTCACACAACTACAACTATGGGCCATGTGGAAGAGCCATTGGAGTGGACCTTTTGAACAATCCCGATCTAGTAGCAACAGACCCAGTCATCTCATTCAAATCAGCTATCTGGTTCTGGATGACTCCTCAATCCCCAAAGCCTTCTTGTCACGATGTCATCACCGGAAGATGGCAGCCATCTGGCGCTGACCAAGCAGCTAATCGCGTCCCTGGATTCGGTGTCATCACAAACATCATCAATGGTGGCCTGGAATGTGGTCACGGCAGTGACAGCAGGGTCCAGGATCGGATTGGATTTTACAGGAGGTATTGCGGAATTCTTGGAGTTAGCCCAGGTGAAAATCTTGATTGTGGCAATCAGAGGTCTTTTGGAAACGGACTATTAGTTGATATTATGTAA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc10g055810.1.1 | SL2.50ch10:57417283..57418434 | 323 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc10g055810.1 | SL2.50ch10:57417284..57418434 | 1,151 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc10g055810.1.1.1 | SL2.50ch10:57418014..57418434 | 421 | - | n/a |
| exon | exon:Solyc10g055810.1.1.2 | SL2.50ch10:57417764..57417917 | 154 | - | 2 |
| exon | exon:Solyc10g055810.1.1.3 | SL2.50ch10:57417284..57417677 | 394 | - | 1 |
| intron | intron:Solyc10g055810.1.1.2 | SL2.50ch10:57417918..57418013 | n/a | - | n/a |
| intron | intron:Solyc10g055810.1.1.3 | SL2.50ch10:57417678..57417763 | n/a | - | n/a |
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