Solanum lycopersicum mRNA Solyc10g079130.1.1
 mRNA details
|
| Name | Type | Organism | |
|
Synonyms / aliases
mRNA:Solyc10g079130.1.1
|
Length
1,578
|
|
Description
Calcium-dependent protein kinase 4 (AHRD V1 ***- Q5EDD1_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase
|
|
Location(s)
SL2.50ch10:60740409..60744010
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0006468
- GO:0005509
- Length
- 3602
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc10g079130.1.1 Calcium-dependent protein kinase 4 (AHRD V1 ***- Q5EDD1_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase
ATGGGTAATTGTTGTGCAGTACCAAAAACTTCAGAAACAGAGGAGAAGAAAAGGGGGAAGAATAAGCCAAATCCATTTTCTGTTGATTATGGTCATCATGGGAATGGACACAAGTCCTATGTGTTGGATAATCCAACTGGTACTGATATTGAGGCAACGTATGAGTTAGGGCGTGAGCTTGGTCGAGGTGAATTTGGGGTTACATATTTGTCTACTGACAAAGTAAGTGGAGAAGTGTATGCTTGTAAATCAATATCGAAGAAGAAACTTAGGACTCGAGTGGATATCGAGGATGTAAGGAGAGAAGTTGAGATCATGAAGCATTTGCCTAAGCATCCTAATATTGTAACCTTAAAGGATACTTATGAGGATGATAATGCAGTGCATATAGTTATGGAGCTGTGTGAGGGTGGTGAGCTATTTGATCGGATCGTTGCAAGGGGGCATTATACCGAGAGGGCAGCAGCTGCGGTGACTCGCACAATTGTTGAAGTGATTCAGATGTGCCATAAGCATGGAGTTATGCATCGGGACCTCAAGCCTGAAAATTTCTTGTTTGAAAACAAGAAAGAGACAGCACCATTGAAGGCAATTGATTTTGGTCTCTCAGTATTCTTTAAGCCTGGTGAGAGATTTAACGAAATTGTGGGAAGTCCGTACTACATGGCGCCCGAGGTGCTGAAGAGAGACTATGGTCCAGAAGTAGATGTCTGGAGTGCTGGAGTAATTCTCTACATCTTGCTATGTGGTGTTCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATCATTCGTTCTGTTGTGAATTTTAAAAGGGACCCTTGGCCTAAGGTATCCGACAATGCAAAAGACCTTGTGAAGAAGATGCTTAACCCTGATCCTAGCCAGAGGCTTACTGCTCAAGAAGTTCTAGATCATCCCTGGATACAAAATGCAAAGAAGGCTCCAAATGTTTCTTTGGGTGAAACAGTGAAAGCAAGGCTCAAGCAATTCTCTATGATGAACAAGCTAAAGAAAAGAGCTTTAAGGGTGATTGCTGAGCATTTGACAGTGGACGAAGTGGCTGGAATAAAGGAGGGATTCCAATTGATGGATATAAGTAACAAAGGGAAGATTGACGTTAACGAGTTGAGAGTTGGGTTGCAGAAACTTGGCCATCAAATTCCCGAATCTGATGTACAGATTCTTATGGATGTTGGTGATGTCGATAAAGATGGATTTTTGGACTACGGGGAATTTGTAGCAATTTCAGTCCATCTAAGAAAGATGGCAAATGAGGAGCACCTGAAGAAGGCATTTGATTTTTTTGATAGGAACCAAAATGGATATATAGAGATTGAGGAATTAAGGGAAGCCTTAGATGACGAGATTGAAACCAACAGTGAAGAAGTTATCAATGCTATTATGCAAGATGTAGACACTGACAAGGATGGACGGATAAGTTACGATGAATTCTCTACTATGATGAAGGCTGGAACAGATTGGAGGAAGGCATCAAGACAGTATTCACGAGAACGATATAATAGTCTCAGTTTGAAACTGATGAAGGATGGATCCTTACAAAGCTAA
ATGGGTAATTGTTGTGCAGTACCAAAAACTTCAGAAACAGAGGAGAAGAAAAGGGGGAAGAATAAGCCAAATCCATTTTCTGTTGATTATGGTCATCATGGGAATGGACACAAGTCCTATGTGTTGGATAATCCAACTGGTACTGATATTGAGGCAACGTATGAGTTAGGGCGTGAGCTTGGTCGAGGTGAATTTGGGGTTACATATTTGTCTACTGACAAAGTAAGTGGAGAAGTGTATGCTTGTAAATCAATATCGAAGAAGAAACTTAGGACTCGAGTGGATATCGAGGATGTAAGGAGAGAAGTTGAGATCATGAAGCATTTGCCTAAGCATCCTAATATTGTAACCTTAAAGGATACTTATGAGGATGATAATGCAGTGCATATAGTTATGGAGCTGTGTGAGGGTGGTGAGCTATTTGATCGGATCGTTGCAAGGGGGCATTATACCGAGAGGGCAGCAGCTGCGGTGACTCGCACAATTGTTGAAGTGATTCAGATGTGCCATAAGCATGGAGTTATGCATCGGGACCTCAAGCCTGAAAATTTCTTGTTTGAAAACAAGAAAGAGACAGCACCATTGAAGGCAATTGATTTTGGTCTCTCAGTATTCTTTAAGCCTGGTGAGAGATTTAACGAAATTGTGGGAAGTCCGTACTACATGGCGCCCGAGGTGCTGAAGAGAGACTATGGTCCAGAAGTAGATGTCTGGAGTGCTGGAGTAATTCTCTACATCTTGCTATGTGGTGTTCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATCATTCGTTCTGTTGTGAATTTTAAAAGGGACCCTTGGCCTAAGGTATCCGACAATGCAAAAGACCTTGTGAAGAAGATGCTTAACCCTGATCCTAGCCAGAGGCTTACTGCTCAAGAAGTTCTAGATCATCCCTGGATACAAAATGCAAAGAAGGCTCCAAATGTTTCTTTGGGTGAAACAGTGAAAGCAAGGCTCAAGCAATTCTCTATGATGAACAAGCTAAAGAAAAGAGCTTTAAGGGTGATTGCTGAGCATTTGACAGTGGACGAAGTGGCTGGAATAAAGGAGGGATTCCAATTGATGGATATAAGTAACAAAGGGAAGATTGACGTTAACGAGTTGAGAGTTGGGTTGCAGAAACTTGGCCATCAAATTCCCGAATCTGATGTACAGATTCTTATGGATGTTGGTGATGTCGATAAAGATGGATTTTTGGACTACGGGGAATTTGTAGCAATTTCAGTCCATCTAAGAAAGATGGCAAATGAGGAGCACCTGAAGAAGGCATTTGATTTTTTTGATAGGAACCAAAATGGATATATAGAGATTGAGGAATTAAGGGAAGCCTTAGATGACGAGATTGAAACCAACAGTGAAGAAGTTATCAATGCTATTATGCAAGATGTAGACACTGACAAGGATGGACGGATAAGTTACGATGAATTCTCTACTATGATGAAGGCTGGAACAGATTGGAGGAAGGCATCAAGACAGTATTCACGAGAACGATATAATAGTCTCAGTTTGAAACTGATGAAGGATGGATCCTTACAAAGCTAA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc10g079130.1.1 | SL2.50ch10:60740408..60744010 | 526 | - | n/a |
Add items to a list:
| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc10g079130.1 | SL2.50ch10:60740409..60744010 | 3,602 | - | n/a |
Add items to a list:
| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc10g079130.1.1.1 | SL2.50ch10:60743510..60744010 | 501 | - | n/a |
| exon | exon:Solyc10g079130.1.1.2 | SL2.50ch10:60742755..60742878 | 124 | - | n/a |
| exon | exon:Solyc10g079130.1.1.3 | SL2.50ch10:60742524..60742667 | 144 | - | 2 |
| exon | exon:Solyc10g079130.1.1.4 | SL2.50ch10:60741764..60741916 | 153 | - | 2 |
| exon | exon:Solyc10g079130.1.1.5 | SL2.50ch10:60741512..60741627 | 116 | - | 2 |
| exon | exon:Solyc10g079130.1.1.6 | SL2.50ch10:60741225..60741392 | 168 | - | n/a |
| exon | exon:Solyc10g079130.1.1.7 | SL2.50ch10:60740698..60740928 | 231 | - | n/a |
| exon | exon:Solyc10g079130.1.1.8 | SL2.50ch10:60740409..60740549 | 141 | - | n/a |
| intron | intron:Solyc10g079130.1.1.2 | SL2.50ch10:60742879..60743509 | n/a | - | n/a |
| intron | intron:Solyc10g079130.1.1.3 | SL2.50ch10:60742668..60742754 | n/a | - | n/a |
| intron | intron:Solyc10g079130.1.1.4 | SL2.50ch10:60741917..60742523 | n/a | - | n/a |
| intron | intron:Solyc10g079130.1.1.5 | SL2.50ch10:60741628..60741763 | n/a | - | n/a |
| intron | intron:Solyc10g079130.1.1.6 | SL2.50ch10:60741393..60741511 | n/a | - | n/a |
| intron | intron:Solyc10g079130.1.1.7 | SL2.50ch10:60740929..60741224 | n/a | - | n/a |
| intron | intron:Solyc10g079130.1.1.8 | SL2.50ch10:60740550..60740697 | n/a | - | n/a |
Add items to a list:
| Related views |
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
