Sol Genomics Network

Solanum lycopersicum gene Solyc10g079240.1

Name Solyc10g079240.1	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc10g079240	Length 2,230

Description

Calmodulin binding protein (AHRD V1 *--- B6T589_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region

Location(s)

SL2.50ch10:60816036..60818265

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2230

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc10g079240.1.1	SL2.50ch10:60816036..60818265	1,266	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc10g079240.1 SL2.50ch10:60816036..60818265
ATGGGAAAGCGAAGAAACTGGTTTACCTTTGTCAAGAGACTTTTCATTCCTGAAACAGAATCAACAGCAGATCAAAAGGTTTGAATTTCAAGATTTCTGTTGCTTAGTAGTGTGAGTGAATCTTCGGATATCTAAACTGGAAATTTATGAAAAATATTTCAGAAACCAAAGAGATGGAGATGTTGTTTTCTGAGAAAGTTCAAGTTGAGGAAATGTCCTGCTATAACATCAGCACCTCAGCAAACGTTACCTGAGGCGAAAGGAACACCTCAGCAAACGTTAACTGAGGCGAAAGAACAGCAAAGAAAACATGCTTTTGCAGTTGCTATAGCAACGGCAGCAGCTGCTGAGGCTGCTGTAGCTGCTGCTAATGCTGCTGCTGATGTTATTCGTCTAACAGATGCTCCAAGTGAATTCAAAAGGAAACGCAAACAAGCTGCTATTAGAATCCAAAGTGCTTATCGCGCTCACCTGGTAAAACATCCTCTCTGGTAGCTCTAGTACTTTCACTCATACAATTTCACTGTGAACTTGTTGCAGAGACGCTTTTAAATGCAGAAAGATTGAAAATTAGTTAGTCATTCAAGACAAAACTTAAAGGATAGTATGGGAAAAGGTAGGCCAGTTTGGATATAGCAGGATTAAACGCCCAGTGCTCTACCAGCTGAGCTACACACCTAAAAAATGATAATCAAGTAAACAAGTATTGATACAGAAAAAAGGCCTGCCCCTTTACTCTCATCTTATTAAAGGAGCACGACTATTTATTATGAGGCTTGTACTACAGAGCAAGTGGAAGCTCCGAAGGTCACACTTTTTTTTTTTTTTGCCTTTTGGCTGTTAATCATATTAGTCATAAGGTAGTCTATCACCTCGGTTGGAAAGAAAATCTTATTGGTTGGAAAATCCCTCTCCGCTAGTAAAACTCTTCTCTTATGGCGGCTACTAATTCTTTTTCCTTTCATCTCTCAAAAAAACTTTCCGAGATTTGGTGAAATGAACTGGTGTCTGATCTATGTCCCTGTGAAATGTTGTGCAGGCCCAGAAAGCATTAAGGGCTCTAAAGGGTGTTGTGAAGCTTCAAGCAGTGATTAGAGGTGAAATTGTGAGAGGAAGACTCATTGCCAAACTGAAGTTCATGTTGCCACTTCATCAAAAGTCAAAAACAAGAGTTAATCAAATTAGAGTCCCTACTTTTGAAGATCATCATGACAAGAAACTCATCAATAGTCCAAGGGAAATTATGAAAGCTAAAGAACTAAAGGTAAGATCAATCATTCATTCTCTTTTGTTTAATTAAGTTTCCAAACATTAGTTCAACTATACTAAATCTATAAAAGAGACCTACTAACACATCTTATTATGACTTTTATGGTTTGGAACTGTAATATGGTTTTTTGTTTTTTTGGCAGCTTAAATGCAAGAGCCTTAGCACTTGGAATTTCAACTTAGCTTCAGAACAAGACAGTGAAGCCTTGTGGTCAAGAAGAGAAGAAGCCATTGACAAAAGAGAGCATTTGATGAAATACTCGTTTTCACATCGGGTAAAGTCATTACTTGTTATACAGACACTGCAATTACACTTGTCAATGTATTATAAAATGTTGTAGCAGTTAACCTGCCTTATTTTCTAGAATACTAATCTCACATTTTATGAACGATTATTTATAATATATTTTTAGGTAAGCTGATAGTATATTGCTTCTTTTAGGAGAGAAGAAACGATCAAACTCTACAAGACTTACTAAACAGAAAGCAAAACAGAAGAAGCTACAGGATTGACCAGTTAGTAGAACTTGACGCACCAAGAAAAGCAGGGTTGTTAGAGAAATTGAGATCATTTACAGACTCAAATGTTCCTCTAACTGATATGGATGGAATGACACAGCTTCAAGTGAGAAAAATGCATAGATCAGATTGTATAGAGGACCTACATTCTCCTTCTTCACTTCCAAGAAGATCATTTTCTAATGCAAAACGAAAATCAAACGTTGATGATAACTCATTACCAAGTTCTCCTATATTTCCTACTTACATGGCAGCCACAGAATCTGCAAAGGCAAAAACAAGGTCAAACAGCACAGCGAAGCAACACCTAAGGTTACACGAGACATTGTCAGGTCAACATTCTCCTTATAACCTCAAGATTTCTTCTTGGAGATTGTCTAATGGTGAAATGTATGACAGCGCCAGAACAAGCAGAACTTCTAGCAGTTATATGTTAATATAG

Download sequence region

Download sequence (2.2Kb)

Get flanking sequences on SL2.50ch10

mRNA Solyc10g079240.1.1

Ontology terms

None

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc10g079240.1.1	SL2.50ch10:60816035..60818265	422	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc10g079240.1	SL2.50ch10:60816036..60818265	2,230	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc10g079240.1.1.1	SL2.50ch10:60816036..60816113	78	+	n/a
exon	exon:Solyc10g079240.1.1.2	SL2.50ch10:60816198..60816509	312	+	n/a
exon	exon:Solyc10g079240.1.1.3	SL2.50ch10:60817075..60817299	225	+	n/a
exon	exon:Solyc10g079240.1.1.4	SL2.50ch10:60817448..60817579	132	+	n/a
exon	exon:Solyc10g079240.1.1.5	SL2.50ch10:60817747..60818265	519	+	n/a
intron	intron:Solyc10g079240.1.1.1	SL2.50ch10:60816114..60816197	n/a	+	n/a
intron	intron:Solyc10g079240.1.1.2	SL2.50ch10:60816510..60817074	n/a	+	n/a
intron	intron:Solyc10g079240.1.1.3	SL2.50ch10:60817300..60817447	n/a	+	n/a
intron	intron:Solyc10g079240.1.1.4	SL2.50ch10:60817580..60817746	n/a	+	n/a

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Related views

Genetic loci

Tomato locus SlSUN1 (SUN-like protein 1)

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17959732%2Fdetails feature 17959732

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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