Solanum lycopersicum mRNA Solyc10g080210.1.1

mRNA details  
Name
Solyc10g080210.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc10g080210.1.1
Length
1,374
  
Description
Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
Location(s)
SL2.50ch10:61559168..61565803
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005975
Length
6636
Nb exon
9
Sifter term
GO:0004650
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc10g080210.1.1 Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28

ATGGTTATCCAAAGGAATAGTATTCTCCTTCTCATTATTATTTTTGCTTCATCAATTTCAACTTGTAGAAGCAATGTTATTGATGACAATTTATTCAAACAAGTTTATGATAATATTCTTGAACAAGAATTTGCTCATGATTTTCAAGCTTATCTTTCTTATTTGAGCAAAAATATTGAAAGCAACAATAATATTGACAAGGTTGATAAAAATGGGATTAAAGTGATTAATGTACTTAGCTTTGGAGCTAAGGGTGATGGAAAAACATATGATAATATTGCATTTGAGCAAGCATGGAATGAAGCATGTTCATCTAGAACACCTGTTCAATTTGTGGTTCCTAAAAACAAGAATTATCTTCTCAAGCAAATCACCTTTTCAGGTCCATGCAGATCTTCTATTTCAGTAAAGATTTTTGGATCCTTAGAAGCATCTAGTAAAATTTCAGACTACAAAGATAGAAGGCTTTGGATTGCTTTTGATAGTGTTCAAAATTTAGTTGTTGGAGGAGGAGGAACTATCAATGGCAATGGACAAGTATGGTGGCCAAGTTCTTGCAAAATAAATAAATCACTGCCATGCAGGGATGCACCAACGGCCTTAACCTTCTGGAATTGCAAAAATTTGAAAGTGAATAATCTAAAGAGTAAAAATGCACAACAAATTCATATCAAATTTGAGTCATGCACTAATGTTGTAGCTTCAAATTTGATGATCAATGCTTCAGCAAAGAGCCCAAATACTGATGGAGTCCATGTATCAAATACTCAATATATTCAAATATCTGATACTATTATTGGAACAGGTGATGATTGTATTTCAATTGTTTCTGGATCTCAAAATGTGCAGGCCACAAATATTACTTGTGGTCCAGGTCATGGTATAAGTATTGGAAGCTTAGGATCTGGAAATTCAGAAGCTTATGTGTCTAATGTTACTGTAAATGAAGCCAAAATTATCGGTGCCGAAAATGGAGTTAGGATCAAGACTTGGCAGGGAGGATCTGGACAAGCTAGCAACATCAAATTTCTGAATGTGGAAATGCAAGACGTTAAGTATCCCATAATTATAGACCAAAACTATTGTGATCGAGTTGAACCATGTATACAACAGTTTTCAGCAGTTCAAGTGAAAAATGTGGTGTATGAGAATATCAAGGGCACAAGTGCAACAAAGGTGGCCATAAAATTTGATTGCAGCACAAACTTTCCATGTGAAGGAATTATAATGGAGAATATAAATTTAGTAGGGGAAAGTGGAAAACCATCAGAGGCTACGTGCAAAAATGTCCATTTTAACAATGCTGAACATGTTACACCACACTGCACTTCACTAGAAATTTCAGAGGATGAAGCTCTTTTGTATAATTATTAA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc10g080210.1.1SL2.50ch10:61559167..61565803458-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc10g080210.1SL2.50ch10:61559168..615658036,636-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc10g080210.1.1.1SL2.50ch10:61565525..61565803279-n/a
exonexon:Solyc10g080210.1.1.2SL2.50ch10:61564748..61564879132-n/a
exonexon:Solyc10g080210.1.1.3SL2.50ch10:61563792..61563956165-n/a
exonexon:Solyc10g080210.1.1.4SL2.50ch10:61563567..6156358721-n/a
exonexon:Solyc10g080210.1.1.5SL2.50ch10:61562814..61563021208-n/a
exonexon:Solyc10g080210.1.1.6SL2.50ch10:61562635..6156271682-2
exonexon:Solyc10g080210.1.1.7SL2.50ch10:61560517..61560625109-1
exonexon:Solyc10g080210.1.1.8SL2.50ch10:61559965..61560081117-n/a
exonexon:Solyc10g080210.1.1.9SL2.50ch10:61559168..61559428261-n/a
intronintron:Solyc10g080210.1.1.2SL2.50ch10:61564880..61565524n/a-n/a
intronintron:Solyc10g080210.1.1.3SL2.50ch10:61563957..61564747n/a-n/a
intronintron:Solyc10g080210.1.1.4SL2.50ch10:61563588..61563791n/a-n/a
intronintron:Solyc10g080210.1.1.5SL2.50ch10:61563022..61563566n/a-n/a
intronintron:Solyc10g080210.1.1.6SL2.50ch10:61562717..61562813n/a-n/a
intronintron:Solyc10g080210.1.1.7SL2.50ch10:61560626..61562634n/a-n/a
intronintron:Solyc10g080210.1.1.8SL2.50ch10:61560082..61560516n/a-n/a
intronintron:Solyc10g080210.1.1.9SL2.50ch10:61559429..61559964n/a-n/a
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Related viewsNone found
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