Solanum lycopersicum mRNA Solyc10g080630.1.1

mRNA details  
Name
Solyc10g080630.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc10g080630.1.1
Length
4,182
  
Description
DNA damage-binding protein 1 (AHRD V1 *--- C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal
Location(s)
SL2.50ch10:61856140..61869046
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005634
Length
12907
Nb exon
15
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc10g080630.1.1 DNA damage-binding protein 1 (AHRD V1 *--- C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal

ATGGCGGTTTCAGAGGAAGAATCACCGTCTTCATCCTCTGCCGGTAGCAGCAAGTCCCGATCATCTGCTTCTCATGGTGCTAGTTATTTGGCTAAGACTGTTCTTAGAGGAAGTGTTGTTCTTCAAGTGGTTTATGGCCGTATACGCTCTCCAACTTCATACGATGTCGTTTTTGGCAAGGAAACATCTATAGAATTGGTGATTATAGATGAAGATGGAGTTGTGCAATCTATTTGTGAGCAGCCTGTATTTGGCATAATAAAAGATATAGCTGTCCTTCCCTGGAATGAGAAGTTTTGTGTTGGAAGCCCACAGCTTCTGGGCAGGGACCTCTTGGTTGTTCTTTCAGATTCAGGGAAGCTGTCAGTTCTCAGATTTTGCAATGAAATGCATAGGTTTTTCGCAGTAACACATGTTCAACTTTCGTCTCCTGGAAATCCTACGGATCAAATTGGAAGAATGTTAGCCGTTGATTCCAATGGTTGTTTTATTGCAGCTAGTGCATATGAAGACAGTTTGGCGCTTTTCTCCCGCTCTGCTTCAGTTGGCAGTGATATATTTGATAAGAGAATCTTTTGTCCCACTGACAAGCAAGGGAAGATCAAGACTGCGAATGGTTTCACTAGTATCTGCGGTACCATATGGAGCATGTGCTTTATCTCGAAAGATGTTCAACCAAATAAGGATTACAATCCTATATTGGCCATTCTTCTCAATAGGAGGAGGTCATATAGGAGCGAGATCGTGTTGATAGAGTGGAATACGAAGGAGCATTCGCTCTATGTAGTATATCAGTGTTCTGAACTTGGACCACTTGCACATCATATCGTAGATATCCCTCATTCTTATGGACTTGTGTTAGTACTTCGTGCTGGTGATGCCATAGTGATGGACTTTAAAGTTCCTCATAGCCCTTGCATTCTTTATCGAATAAGTTTAAATTTTACACCTCCTTCAGTTGAGGAGCCAAATTTTGTACGAGAGACTATTAGAATTCCCGATATTATAGACGAAGAAGGTATCTACAGTGTTGCGGCATCTGCATTGCTTGAGCTCAGCGATTTGAATAAAAATGACCCAATGAATATTGATGATGATAGCAATGTAAAGCCGGGTTCGAATTTCGTGTGCTCATGGAGTTGGAATCCTGGAAATGAGAACAGTCCTAGAATGATATTTTGTGCAGACTCTGGAGAGCTTTTCTTGATTGATTTTTTATTTGATTCTGATGGCCTGAAAGTATCTCTGTCTGATTCTCTTTACAAGACTTTACCAGCCAAGGCACTTTTGTGGGTGAGAGGTGGATTTTTGGCAGTTATTATTGAAATGGGTGATGGGATGGTGCTAAAAGTTGAAGACGGAAGACTTGATTATAGAAGTCCAATCCAAAATATCGCACCAATATTGGATATGTCGGTTGTGGATTACCATGATGAGAAACATGATCAAATGTTTGCCTGCTGCGGGATGGCACCTGAAGGATCTTTACGAGTTATACGTAGTGGCATCAGTGTAGAGAAATTGTTGAAAACTTCTCCCATTTATCAGGGTATTACTGGAACTTGGACAGTTAAAATGAAACTTGCTGATTCTTATCATTCTTTCCTTGTACTGTCTTTTGTTGAAGAGACCAGGGTGCTATCTGTTGGTGTGAGCTTTTCTGATGTAACTGACTTCATGGGTTTCCAACCTGATGTTTGCACGTTGGCATGTGGTCTTGTGGGTGATGGTCTGCTGGTGCAAATCCACCAGACTGCTGTGAGACTGTGTGTACCTATTGCTGCTGCACATCCAGATGGTATTGATTCAGCATCACCAACTTTCACGTCGTGGTCCCCTGATAATATGACAATAAGCCTGGGAGCTGTTGGGCCTAATTTGATAGTTGTTGCAACTTCCAGTCCATGTTACCTATTCATTCTTGGCATCAGGACAGTATCAGCCCGTCATTATGAAATATACCAGTTGCAACATGTGAAATTGCAAGATGAACTTTCCTGCATTGCAATCCCCCAAAGACTGCTTGAGCAGACATCTTTTATCTCTAGAACTAGTAATAGAAGTGGAGTTCGTCTGGATTCTCTTCCGGTCGGATTGGACATCAGTAACACCTTCGTTATTGGTACACATAAGCCTTCTGTAGAAGTTTTATCATTTACTTCCGATAAGGGCCTGAGTGTTCTTGCTGTAGGGTCTATAACCTTAACAAACACTCTTGGGACAACTGTAAGTGGCTGCATCCCTCAAGACATAAGACTTGTACTCGTCGATCGGCTGTATGTTCTTTCAGGATTGAGGAATGGTATGCTACTCAGATTTGAGTGGCCTTCTATCTCGGCAATTTACTCACTAGTCTCACCTGGCCTTCAGACTTTTGACAATTCTTGTATGGCTAATTGCATTAGTTCCTCAACTTCTGCATCTCAGAATTTTAGAAGTCAACCTACACAAGTGACCAGTTTATTGGATAAGACGAAGGATTTTCCTGTTTATCTGCAGTTAGTTGCAGTTCGTCGGATTGGCATCACTCCTGTTTTTCTGATTCCATTAAATGATTCTCTTGATGCTGATGTGATCGCTCTAAGTGATAGGCCCTGGCTATTGCAAACTGCAAGGCATAGCCTCTCGTATACTTCAATATCTTTTCCACCTTCCACACATGTTACTCCAGTCTGTTCAACTGAATGTCCCAAGGGAATTATCTTTGTTGCTGAAAACAGTCTTCATTTGGTGGAAATGGTGCCTAGTAAACGGCTTAATGTGCAGAAATTTCATTTTGGCGGCACTCCTCGAAAGGTTCTATATCATAGCGATAGTAGGTTGTTGCTTGTATTAAGAACTGATCTCAGTGATGATTTATGTTCATCTGATGTCTGCTGCATAGATCCTCTCAGTGGATCAGTGTTGTCATCCTTTAAGTTTGAGCTTGGTGAGATAGGAAAATGCATGGAGTTGGTAAAAGCCGGAAATGAACAAGTTCTTGTTGTTGGAACTGGTCTCTCTTCTGGTCCAGCTATAATGCCTAGTGGTGAAGCTGAAAGTACAAAGGGCCGTTTAATAGTACTTTGCGTCGAGCAAATGCAAAACTCAGATAGTGGATCAATTGCATTTTCTTCGAGGGCTGGATCATCTTCTCAACGGACTTCACCTTTCCGTGAGGTTGGTGGATATGCTGCCGAACAGCTGTCTAGCAGTAGTATCTGTAGCAGTCCTGATGATAACAGTTGTGACGGGATTAAGCTTGAGGAGAGTGAAGCATGGCACTTAAGATTAGGTTATTCAACCACTTGGCCTGGAATGGTGCTTGCAGTCTGCCCTTATCTTGATCGTTTTTTCTTGGCCTCTGCGGCTAATTGTTTCTATGTTTGTGGTTTTCCAAATGACAATGCCCAAAGAGTCAGACGCTTAGCAGTAGGAAGAACACGGTTCATGATCATGACTCTTACGGCACACTTCACTAGAATTGCTGTTGGTGATTGTCGTGATGGCATCCTTTTCTACTCGTATCAAGAGGATTCAAGAAAACTAGATCAAATTTACTGTGACCCTGTCCAGAGGTTAGTTTCTGATTGCACTCTTATGGATGGAGACACAGCTGCCGTTTCAGATCGAAAGGGGAGTTTTGCAATTTTATCATGTCTGAATTACATGGAAGATAATTTCAACAGTCCAGAACGCAATCTAGCTCAAACTTGTTCATTCTACATGGGCGAGATAGCTATAAGAATTCGAAAGGGGTCATTCTCCTATAAACTTCCTGCAGATGATGCACTTAGGGGCTGTCAAGCTACCAGCATTGTCGGTGACATATCACAAAATAGTATCATGGCTAGTACGCTTTTAGGGAGCATAATTATTTTTATTCCTCTTACTAGGGAGGAATATGATCTCTTAGAAGCAGTACAGGCCAGGCTTGTCATCCATCCGCTGACTGCTCCTATTTTGGGAAATGACCATACTGAATATCGTTGTCGTGGAAGTATGGCTAGGGTACCTAAAGCTCTGGATGGTGATATGCTTGCTCAGTTCTTGGAGCTTACTAGTATGCAACAAGAAGCTGTATTAGCATTGCCTCTTGGCGCACAAAACACAATTATGTTCAATTCGAAGCAATCTCCTGATCCAATTACTGTTAATCAGGTTGTGCGACTGCTAGAACGAATTCATTATGCCCTGAACTGA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc10g080630.1.1SL2.50ch10:61856139..618690461,394-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc10g080630.1SL2.50ch10:61856140..6186904612,907-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc10g080630.1.1.1SL2.50ch10:61868867..61869046180-n/a
exonexon:Solyc10g080630.1.1.10SL2.50ch10:61860851..61861006156-n/a
exonexon:Solyc10g080630.1.1.11SL2.50ch10:61860482..61860623142-n/a
exonexon:Solyc10g080630.1.1.12SL2.50ch10:61858646..6185872580-2
exonexon:Solyc10g080630.1.1.13SL2.50ch10:61857496..61857635140-n/a
exonexon:Solyc10g080630.1.1.14SL2.50ch10:61856669..61856777109-1
exonexon:Solyc10g080630.1.1.15SL2.50ch10:61856140..61856337198-n/a
exonexon:Solyc10g080630.1.1.2SL2.50ch10:61865204..61865338135-n/a
exonexon:Solyc10g080630.1.1.3SL2.50ch10:61865039..6186511880-n/a
exonexon:Solyc10g080630.1.1.4SL2.50ch10:61864814..6186489784-1
exonexon:Solyc10g080630.1.1.5SL2.50ch10:61864597..6186468488-1
exonexon:Solyc10g080630.1.1.6SL2.50ch10:61864343..61864494152-n/a
exonexon:Solyc10g080630.1.1.7SL2.50ch10:61862176..618641862,011-1
exonexon:Solyc10g080630.1.1.8SL2.50ch10:61861622..61861932311-n/a
exonexon:Solyc10g080630.1.1.9SL2.50ch10:61861102..61861417316-1
intronintron:Solyc10g080630.1.1.10SL2.50ch10:61861007..61861101n/a-n/a
intronintron:Solyc10g080630.1.1.11SL2.50ch10:61860624..61860850n/a-n/a
intronintron:Solyc10g080630.1.1.12SL2.50ch10:61858726..61860481n/a-n/a
intronintron:Solyc10g080630.1.1.13SL2.50ch10:61857636..61858645n/a-n/a
intronintron:Solyc10g080630.1.1.14SL2.50ch10:61856778..61857495n/a-n/a
intronintron:Solyc10g080630.1.1.15SL2.50ch10:61856338..61856668n/a-n/a
intronintron:Solyc10g080630.1.1.2SL2.50ch10:61865339..61868866n/a-n/a
intronintron:Solyc10g080630.1.1.3SL2.50ch10:61865119..61865203n/a-n/a
intronintron:Solyc10g080630.1.1.4SL2.50ch10:61864898..61865038n/a-n/a
intronintron:Solyc10g080630.1.1.5SL2.50ch10:61864685..61864813n/a-n/a
intronintron:Solyc10g080630.1.1.6SL2.50ch10:61864495..61864596n/a-n/a
intronintron:Solyc10g080630.1.1.7SL2.50ch10:61864187..61864342n/a-n/a
intronintron:Solyc10g080630.1.1.8SL2.50ch10:61861933..61862175n/a-n/a
intronintron:Solyc10g080630.1.1.9SL2.50ch10:61861418..61861621n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17961188%2Fdetails feature 17961188
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