Notice: Due to a wide-spread power outage in the area, SGN was unavailable early on Sunday. We apologize for the inconvenience.

Solanum lycopersicum mRNA Solyc11g008530.1.1

mRNA details  
Name
Solyc11g008530.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc11g008530.1.1
Length
3,954
  
Description
Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III
Location(s)
SL2.50ch11:2700331..2706663
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006396
  • GO:0006508
  • GO:0005524
  • GO:0005622
Length
6333
Nb exon
21
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc11g008530.1.1 Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III

ATGCTTCTTAGAAGCTATGCTTCCCTTCTTCGTAAACCGTCGCCTTACATAGCTGTTTTCTTGGTTCCGACTGTTGTTCTAGTGACTCAGCAAGGAGATGCTCTGATGTTGCATACCGACTTAAAAGTGGGCAAATATTGGGGAGAAAAGGGTGTTGATTACTGGAATGCTGCTACATGGCAACAACTAGTGGACGATCATGAGGTACTTGTTATGACACCAGCAATATTACATGCTGCTTTGAGGCACAGTTTTTTACAAATGGGCATGATAAAAGTTATAATATTTGACGAGTGTCACAATGCACGAGGCAAGCACCCCTATGCCAGTATAATGATGGAATTTTATCATCGCCAGTTGACTCGTGAGAATGCACAACTTCCAAGAATATTTGGGATGACTGCTTCCCCTATAAAGTCTAAAGGTTCTAGCACGGCAGATAGTTATTGGCAAAAGATTCGTGACCTCGAGAATCTCATGCATTCCAAGGTATACACGTGTAGCAGTGAATCTGTTCTGGCGGATTATATCCCATTTTCAAATCCGAAGCTGAAAATATATGAACATGTGGATATTCCTTCCAAATTGTTTCAGACATTAGTTCATGACCTGGAAAGGTTGAAAGAAAAGCATGAATGTTTGATTTCACAGTCAAATCTGTCTTTTATGAGAGATGGATCTGCAAGAAGACGTTTATCAAAACTTCATTCGAATTTCTTATTTTGTTTGAGTGAGATGGGTGCTTGGCTGGCTTTCAAGTCCTGTGAAGAAAATGATTTCCTTTCATCGGACGATGCATGTGTTAGAGATTTCTGTTTGGGTGCATCTACGATTTTCTCGGCTCACTTACCTTCTGGACCACATTGGTCAATTGGAAAGGATATTCAGGCAAATGTGGATGCTGGATATTTGTCATCCAAAGTTAATTGTCTTCTAGAGTCTCTTCTCGAGTACAGGGACCGGAAGGATTTGAGATGCATCATATTTGTTGAGAGAATTATTACAGCCATTGTTCTTCGGTCTCTATTGAATGAGTTGTTTCTGGAACGAAGTGGTTGGAGAACTGAGGTCACAACAGGGCGTATTACTACGTTCAAACAAAATAAAATTGTTGAAGAATTTCGAAAGGGGTTGGTGAACATTATTGTAGCGACATCGATTCTTGAAGAGGGCTTGGATGTTCGAAGTTGCAACCTTGTCATTAGATTTGATCCCTCAACTACTGTTTGTAGCTTTATACAATCACGTGGAAGAGCTCGAATGCAAAACTCCGACTTCATTCTGATGGTCAGGAAAGGAGATGATGCAACCCTTACTCGCATGCAAAACTATAAAGCTAGTGTGGAGATAATGCGGCAAGAATCATTACGCCATGCTTCTATTCCGTGTTCAACTCTACATGATGAATTGTATGATGAATGCTACAAAGTTGAAAGCACAGGAGCAGTTGTCACCCTCAGTTCTAGCGTGTCATTGTTAGACTTCTATTGCTCAAGGCTACCGTCGGATGGGTACTTTAAACCCGATCCTACATATGTGATTAATGAGGAAACAGAAACCTGCACGCTACAACTTCCCAAAAGCTCGCCACTGCAAGGAATTATTAGCGTACAGGGGAAGAGAAAAATATTGAAGCAACTTGCATGCCTTGAAGCTTGTAAACAACTTCATCGTGTGGGTGCCTTGACTGACAATCTTGTTCCTGATATCGTGGAGGAAGAAACCATCAACAAAGAATTGGAATGTAAAATAAAAATTGTTGAACAATCATTATACTATCCATCAGAATTTGTTAGTCATTGCGGGAATGAGTCAGAAGCAGTGTACTACTGCTACCTAGTTGAGTTGCCACATGACTCTTACAACGATTCCCAGCTTCATGGGATTATACTTGCTGTTAGGACAAAGCTCAAGTTTGATGATGAAATATTGGCATTTGACTTGGATGTTGATAGGAGGGGACGCTTGAAAGTTCAACTTAATTATAGGAAAGTTGTTATATTTACTTCTGAAGAGATTCGACGGTGTCAAAGATTTCAAGTGAGTGTCTTCAGAATTCTTCGTGACCCCGATCTAAGTAAACTGCAGGAAGTTTTGGCTGCTGTTCAATCACCTATTGGTTCTGCAGTATCCGATTATCTGTTGCTCCCATCTGTGGGTACACCCCCCGAAATAAATTGGCAATATGTGAATTCTTTGCTGTTTCCGTCTCAAGTTCTTGGGGATAAGCATATGGATTGGTGTTCTACTCAAGGTCGCAGATGCAGTGTGAACACCATAAGTGAGGTGGTATGTAGCTGCATGTTGGAGAACTCATTGGTATGTACACCTCATAATGGACGTATATACTGCATAAACGGTTTTTTGGAGAATTTGGATTGCAACTCATTAATGGGTGTGAGAAGTGAAGAATCTATTACCTACAGAGAACACTACAGAAAGCGGTATGGGATCAACATATGCTCTGAAGAAGTACCACTTCTTAGGGGAAAACATATTTCTAAGGAAGCTAAAGATTCATCTGTTGCATTGCCTCCTGAACTTTGTTCCCTCATCATGTCACCTCTCTTTATATCTACCCTTAATACCTATTCATATGTTCCTTCGATTATGCATCGGATTGAGTCCTTGATTATGGCCTCAAACTTGAAAAAAATGCATTTGGATCACTGCACACAAAATGTTGTTATTCCAACTGCTAAGATTTTGGAAGCAATGACAACGAAGAATTGTCTCGAGAAGTTTCATTTGGAATCACTTGAGACACTTGGAGACTCCTTTCTCAAATATGCTGCCAGTATAAAGCTGTTCAAGACTTATGAAAATGATCATCAAGGTCTTCTCACCGTTAAGAGAAAACAAATCATTTCCAACGCTACACTATGCAGGCTTGGATGTGCTCGTAAAATGCCGGGATTTATCCGTAATAAACCATTCGTTCTTAAAGCATGGATTATTCCTGGTGATAATTCTCAAGTTCACAACTTCGACGAAGAGCTACTAACGTCCTCAGTTAAAATGTATAGTAGGGGAAAACAGAAGATTAAAAGTAAGATAATGGCTGATGTGGTCGAGGCACTAATAGGTGCCTACCTCAGCTCGGGTGGGGAAGTAGCGGCTTTGTCATTTATGAAATGGCTTGGAGTGGACATCAATTTTGTTGATGCACCTACGTCAAGGCACTTACCCGTGAATGCAGAGAAGCTAGTTAACGTCAGATACTTGGAATCCCTGCTACATTACAAGTTCAATGATCCTTCTCTGCTTGTTGAAGCGCTAAGTCATGGATCTTGCATGCTACCTGACATTCCACGATGCTATAAGCGCTTGGAATTTCTCGGAGATGCAGTGCTAGATTACGTTGTTACAACACATCTCTATTTCAAATATCCGGGACTAACTCCAGGACTTATTACTGATTTGAGGTCTGCCTCTGTAAACAATGAATGTTATGCTCTATCTGCAGTTAAGGCTGGCCTGCACGATCACATTCTTTATGACCTGCAAGTTCTGCAAAGGCATATATCTAGTACTGTCGAGGATTTCAAGAAATTGAACCTTGTGTCCACATTCGGATGGGAGGCTGAAACTACTTACCCGAAGGTGCTTGCAGATGTTATCGAGTCCCTTGCTGGTGCGATATTTGTTGATTCTGGTTTCAACCAAGACACTACATTTCTGTGCATACGACCTCTTTTGGAACCGTTGATTACACCTCAGACGCTAAAAGTCCATCCAGCAAGAGAGTTACGCGAACTATGTCACCAGAAAGGTTATATAAAGCAGAAGAATGTCGTCTTTCGTGAGAATGGTATAGTATATGTTACAGTAGAGGTTGAAGCAAATGGTGTTATTCACAAGGACTCGAACTCGGGACGAAACCAAAAAATGGCTGAGAAGGTGGCTAGCAAATATTTGCTCAAGTCTCTCAAAGAATATCCATACAATCCATAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc11g008530.1.1SL2.50ch11:2700330..27066631,318+n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc11g008530.1SL2.50ch11:2700331..27066636,333+n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc11g008530.1.1.1SL2.50ch11:2700331..270042090+n/a
exonexon:Solyc11g008530.1.1.10SL2.50ch11:2702494..2702671178+1
exonexon:Solyc11g008530.1.1.11SL2.50ch11:2702758..2702918161+n/a
exonexon:Solyc11g008530.1.1.12SL2.50ch11:2703153..2703368216+1
exonexon:Solyc11g008530.1.1.13SL2.50ch11:2703475..2703704230+1
exonexon:Solyc11g008530.1.1.14SL2.50ch11:2703782..2704056275+2
exonexon:Solyc11g008530.1.1.15SL2.50ch11:2704246..2704673428+n/a
exonexon:Solyc11g008530.1.1.16SL2.50ch11:2704755..270482571+1
exonexon:Solyc11g008530.1.1.17SL2.50ch11:2704900..2705087188+2
exonexon:Solyc11g008530.1.1.18SL2.50ch11:2705193..2705402210+n/a
exonexon:Solyc11g008530.1.1.19SL2.50ch11:2705474..2705884411+n/a
exonexon:Solyc11g008530.1.1.2SL2.50ch11:2700589..2700702114+n/a
exonexon:Solyc11g008530.1.1.20SL2.50ch11:2705958..2706236279+n/a
exonexon:Solyc11g008530.1.1.21SL2.50ch11:2706313..2706663351+n/a
exonexon:Solyc11g008530.1.1.3SL2.50ch11:2700859..2700993135+n/a
exonexon:Solyc11g008530.1.1.4SL2.50ch11:2701083..270116785+n/a
exonexon:Solyc11g008530.1.1.5SL2.50ch11:2701288..270135265+2
exonexon:Solyc11g008530.1.1.6SL2.50ch11:2701511..2701651141+n/a
exonexon:Solyc11g008530.1.1.7SL2.50ch11:2701900..2702028129+n/a
exonexon:Solyc11g008530.1.1.8SL2.50ch11:2702118..270221497+n/a
exonexon:Solyc11g008530.1.1.9SL2.50ch11:2702312..2702411100+2
intronintron:Solyc11g008530.1.1.1SL2.50ch11:2700421..2700588n/a+n/a
intronintron:Solyc11g008530.1.1.10SL2.50ch11:2702672..2702757n/a+n/a
intronintron:Solyc11g008530.1.1.11SL2.50ch11:2702919..2703152n/a+n/a
intronintron:Solyc11g008530.1.1.12SL2.50ch11:2703369..2703474n/a+n/a
intronintron:Solyc11g008530.1.1.13SL2.50ch11:2703705..2703781n/a+n/a
intronintron:Solyc11g008530.1.1.14SL2.50ch11:2704057..2704245n/a+n/a
intronintron:Solyc11g008530.1.1.15SL2.50ch11:2704674..2704754n/a+n/a
intronintron:Solyc11g008530.1.1.16SL2.50ch11:2704826..2704899n/a+n/a
intronintron:Solyc11g008530.1.1.17SL2.50ch11:2705088..2705192n/a+n/a
intronintron:Solyc11g008530.1.1.18SL2.50ch11:2705403..2705473n/a+n/a
intronintron:Solyc11g008530.1.1.19SL2.50ch11:2705885..2705957n/a+n/a
intronintron:Solyc11g008530.1.1.2SL2.50ch11:2700703..2700858n/a+n/a
intronintron:Solyc11g008530.1.1.20SL2.50ch11:2706237..2706312n/a+n/a
intronintron:Solyc11g008530.1.1.3SL2.50ch11:2700994..2701082n/a+n/a
intronintron:Solyc11g008530.1.1.4SL2.50ch11:2701168..2701287n/a+n/a
intronintron:Solyc11g008530.1.1.5SL2.50ch11:2701353..2701510n/a+n/a
intronintron:Solyc11g008530.1.1.6SL2.50ch11:2701652..2701899n/a+n/a
intronintron:Solyc11g008530.1.1.7SL2.50ch11:2702029..2702117n/a+n/a
intronintron:Solyc11g008530.1.1.8SL2.50ch11:2702215..2702311n/a+n/a
intronintron:Solyc11g008530.1.1.9SL2.50ch11:2702412..2702493n/a+n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17970673%2Fdetails feature 17970673
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)