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Solanum lycopersicum mRNA Solyc11g008540.1.1

mRNA details  
Name
Solyc11g008540.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc11g008540.1.1
Length
4,059
  
Description
Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III
Location(s)
SL2.50ch11:2715282..2724508
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006396
  • GO:0005524
Length
9227
Nb exon
21
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc11g008540.1.1 Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III

ATGCTTCTTAGAAGCTATGCTTACCTTCTTCGGAAGCCGTCTCCGTACATAGCTGTTTTCTTGGTCCCGACCGTTGTTCTGGTGACTCAGCAAGGAGATGCTCTGATGTTGCATACCGACTTAAAAGTGGGCAAATATTGGGGAGAAATGGGCGTTGATTATTGGGATGCTTCTACATGGCAACAACAAGTGGATGATCATGAGGTACTTGTTATGACTCCGGCAATACTACTTGCTGCTTTGAGGCACAGCTTTTTACAAATAGACATGATAAAAGTTATAATATTTGATGAGTGCCACAATGCCCGAGGCAAACACCCCTATGCCAGCATAATGGTGGAGTTCTATCATCACCAGTTAACCCATGAGAGCGCACAACTTCCAAGAATATTTGGGATGACTGCTTCCCCTATAAAGTCTAAAGGTGCTAGCACGGCACATAGTTACTGGCAAAAGATCCATGACCTCGAAAATCTTATGAATTCCAAGGTATACACGTGTAGCAGTGAATCTGTTCTGGCAGAGTATATCCCATTCTCAAATCCGAAGTTGAAGATATATGAACATGAGGATATTCCTTGCTCACTGTTTAATACTTTAGCTCATGACCTGGAAAGGTTGAAAGAAAAGCATGAATGTTCGATTTCAAAGTCAAACCTGTCTGCTATGAGTGCTGGATCTGCAAGAAGACGTTTATCGAAACTTCACATGGCTTTCTTATTTTGTTTGAGTGAGATGGGTGTGTGGCTGGCTTTCAAGGCAGCTGAGTTCTTGTCCTTTGAAGAAAATGATTTCTTTTCATGGGGAGAATTTGATGCATGTGCTCAGACAATTGTTAGAGATTTCAGTTTGGGTGCATCTAAGATTTTTTCGGCCCGCTTACCTTCAGGGCCACATTGGTCAATTGGTGGTGATATTCAGGCAAATGCGGATGCTGGATATTTGTCATCCAAAGTTAATTGTCTTCTAGAGTCTCTTCTTGAGTACAGGGACCAAAAGGATTTGAGATGCATTATATTTGTTGAGAGAATTGTTACAGCCATTGTTCTTCGGTCTCTACTGAATGAGTTGCTTCCGGAACGAAGTGGTTGGAGAACTGAGTATACAGCAGGGCATGTTTCTGTGCTCCAGTCACAGAGTAGAAAAAGTCAAAATAAAATTGTTGAAGAATTTCGCAAGGGGCTGGTGAACATTATTGTAGCGACATCTATTCTTGAAGAGGGCTTGGATGTTCAAAGTTGCAATCTTGTGATTCGATTTGATCCATCAGCTACTGTTTGTAGCTTTATACAATCACGTGGACGAGCTCGAATGCAAAACTCCGACTTTCTTCTGATGGTCAGAGATGGGGATGATCCAACCCTTACTCGCATGCAAAACTATATGGCTAGTGGAGAGATAATGCGGCAAGAATCATTACGCCATGCTTCTATTCCATGTTCACCTCTAGATGATGAATTGTATGATGAGCCTTGCTACAAAGTTGAAAGCACAGGAGCAGTTGTCACCCTCAGTTCTAGCGTGTCATTGCTATACTTCTATTGCTCAAGGCTACCGTCGGATGGGTACTTTAAACCCAATCCTAGGTGTGTGATTGATAAGGAAACAGAAACCTGCACGCTACAACTTCCCAAAAGCTCGCCACTGCAAGGAATTATTAGCGTACAGGGGAAGAGAAAAATATTGAAGCAACTTGCATGCCTTGAAGCTTGTAAACAACTTCATCGTGTGGGTGCCTTGACTGACAATCTTGTTCCTGATATCGTGGAGGAAGAAATCATCAACAAAGAATTGGAATGTCAAATCCAGACTGTTGAAGAATCAAAATACTTTCCACCAGAATTGGTTAGTCATTGCAGCAATGATTCAGAAGCAGTGTACTACTGCTACCTAGTTGAGATGCAACATGCCTCTTACAACGACTTCGAGCTTCATGGGATTATACTTGCTGTTAGGACAAGGCTCAAGTGTGATGATGAAATACTGGCATTTGACTTGGACGTTGATAGGAGGGGACTCTTGCAAGTTCAACTTAATTATAGTAAAGTTGTTACACTTACTGCTGAAGAGATTCGACGATGTCAGAGGTTTCAAGTCAGTGTCTTCAGAATTCTTCTTGACCGTGATCTGAGTATACTGCAGGATGCTTTGGGTGCAGTTCAATCGCCCATTGGTTCTGCAGTTTCTGATTATCTGTTGCTCCCGTCATTGGGTAGTACCCCTGAAATAAATTGGAAATGTGTGAATTCTTTGTTGTTTCCGTCTCAAGCTCTTGGGGATAAGCATATGGATTGGTGTTCTACTCAAGATCGCAAACGCAGTGTGAACACCAAAAATGGGTTGGTATGTAGCTGCATGTTGGAGAATTCATTGGTCTTTACACCTCACAATGGCTATATATACTGCGTTACCGGTTTTTTGGATAAGTTGGATTGCAACTCATTGTTGGGAATGAGAACTGGAGAATCCATAACCTACATAGAATACTACAAAAAGCGGCATGGGATCAACATATGCTTTGAAGAAGAACCACTTCTTAGGGGAAAACATATTTGTAAAGTGCACAATTACCTTCAGAGAAGCAGAACTCAGAAGGCTAAAGATTCAACTGATTCATCTGTTGAGTTGCCTCCTGAAATTTGTTCCCTCATCATGTCACCTCTCTCTATTTCTACACTTAATACCTATTCATATGTTCCTTCAATCATGCATCGGATTGAGTCCTTGGTTATGGCCTCAAACTTGAAAAGAATGCATTTGGATCACTGCACACTGAATGTTCCTATTCCAACCGCTACGATTCTGGAAGCAATGACAACAAAGAAATGCCTTGAGAAGTTTCATTTGGAATCACTTGAGACACTTGGAGACTCTTTTCTCAAATATGCTGCCAGTATAAAGCTGTTCAAGACTTACGAAAATCATCATGAGGGTCTTCTCACTGTCAAGAAAACTCAGATTATTTCCAATGCTGCACTATGCAAGCTTGGATGTGCTCGTAAAATACCGGGATTTATCCGTAATGAACCATTCGATCTTAAAGCATGGATCATTCCTGGTGATAATTCTCAAGTTCACAGCTTCGACGAAGTGCTCCTAACGTCCTCAGATAAAATGTATAGTAGGGTAAAACAGAAGATCAGAAGTAAGAGAGTAGCTGATGTGGTCGAGGCACTAATAGGTGCCTACCTCAGCTCGGGTGGGGAAGTAGCGGCTTTGTCATTTATGAAATGGCTTGGAGTGGACATCAATTTTGTTGATGCACCTATGTCAAGGCACTTTCCCATGAATGCTGAGAAGCTAGTTAATGTCAGATACTTGGAATCCCTGCTACATTACAAGTTCAATGATCCTTCTCTGCTTGTTGAAGCGCTAACTCATGGATCTTACATGATACCTGAGATTCCACGATGCTATCAGCGCTTGGAATTTCTTGGAGATGCAGTGCTCGATTATGTTGTTACAGCACATCTCTATTTCAAATATCCTGGACTGACTCCAGGACTAATTACTGATTTGAGGTCTGCCTCCGTAAACAACGAATGCTATGCTCAATCTGCAGTTAAGGCTGGCCTGCACAAGCACATTCTTCATGCCTCCCAAGATCTCCAAAGACAGATATGTAGTACTGTTGAGGATTTCGATAAATTGAACCTTGACTCCACGTTCGGATGGGAAGCTGAAACTACTTTCCCAAAGGTGCTTGGAGATGTTATAGAGTCTCTTGGTGGTGCGATCTTTGTTGATTCTGGCTTTGACAAAGAAACTACATTTCAGTGCATACGACCTCTTTTGGAACCGTTGGTTACACCTCAGACACTAAAGCCCCATCCGGTAAGAGAGTTAAGTGAACTATGTGACCAGAAAGGTTATATAAGGAAGAAGGATGTCGTCTCTCGTGAGAATGGTATAGCTTATATCACAGTAGAGGTCGAAGCAAATGGCGTTGTCCACAAGAGTACATGCTCGGGACGAGACAAACTAATAGCCAAGAAGGTGGCTAGCAAAAATGTGCTCAAGTCTCTGAAAGAATGTCCATCTAATGCTACTGAACAGTAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc11g008540.1.1SL2.50ch11:2715281..27245081,353+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc11g008540.1SL2.50ch11:2715282..27245089,227+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc11g008540.1.1.1SL2.50ch11:2715282..271537190+n/a
exonexon:Solyc11g008540.1.1.10SL2.50ch11:2719364..2719559196+1
exonexon:Solyc11g008540.1.1.11SL2.50ch11:2719640..2719800161+n/a
exonexon:Solyc11g008540.1.1.12SL2.50ch11:2720061..2720279219+1
exonexon:Solyc11g008540.1.1.13SL2.50ch11:2720386..2720615230+1
exonexon:Solyc11g008540.1.1.14SL2.50ch11:2720692..2720966275+2
exonexon:Solyc11g008540.1.1.15SL2.50ch11:2721066..2721493428+n/a
exonexon:Solyc11g008540.1.1.16SL2.50ch11:2721584..2721687104+1
exonexon:Solyc11g008540.1.1.17SL2.50ch11:2721757..2721953197+2
exonexon:Solyc11g008540.1.1.18SL2.50ch11:2722072..2722281210+n/a
exonexon:Solyc11g008540.1.1.19SL2.50ch11:2722759..2723169411+n/a
exonexon:Solyc11g008540.1.1.2SL2.50ch11:2715603..2715716114+n/a
exonexon:Solyc11g008540.1.1.20SL2.50ch11:2723734..2724012279+n/a
exonexon:Solyc11g008540.1.1.21SL2.50ch11:2724149..2724508360+n/a
exonexon:Solyc11g008540.1.1.3SL2.50ch11:2716461..2716595135+n/a
exonexon:Solyc11g008540.1.1.4SL2.50ch11:2717103..271718785+n/a
exonexon:Solyc11g008540.1.1.5SL2.50ch11:2717298..271736265+2
exonexon:Solyc11g008540.1.1.6SL2.50ch11:2717526..2717666141+n/a
exonexon:Solyc11g008540.1.1.7SL2.50ch11:2717960..2718088129+n/a
exonexon:Solyc11g008540.1.1.8SL2.50ch11:2718755..2718884130+n/a
exonexon:Solyc11g008540.1.1.9SL2.50ch11:2718999..2719098100+2
intronintron:Solyc11g008540.1.1.1SL2.50ch11:2715372..2715602n/a+n/a
intronintron:Solyc11g008540.1.1.10SL2.50ch11:2719560..2719639n/a+n/a
intronintron:Solyc11g008540.1.1.11SL2.50ch11:2719801..2720060n/a+n/a
intronintron:Solyc11g008540.1.1.12SL2.50ch11:2720280..2720385n/a+n/a
intronintron:Solyc11g008540.1.1.13SL2.50ch11:2720616..2720691n/a+n/a
intronintron:Solyc11g008540.1.1.14SL2.50ch11:2720967..2721065n/a+n/a
intronintron:Solyc11g008540.1.1.15SL2.50ch11:2721494..2721583n/a+n/a
intronintron:Solyc11g008540.1.1.16SL2.50ch11:2721688..2721756n/a+n/a
intronintron:Solyc11g008540.1.1.17SL2.50ch11:2721954..2722071n/a+n/a
intronintron:Solyc11g008540.1.1.18SL2.50ch11:2722282..2722758n/a+n/a
intronintron:Solyc11g008540.1.1.19SL2.50ch11:2723170..2723733n/a+n/a
intronintron:Solyc11g008540.1.1.2SL2.50ch11:2715717..2716460n/a+n/a
intronintron:Solyc11g008540.1.1.20SL2.50ch11:2724013..2724148n/a+n/a
intronintron:Solyc11g008540.1.1.3SL2.50ch11:2716596..2717102n/a+n/a
intronintron:Solyc11g008540.1.1.4SL2.50ch11:2717188..2717297n/a+n/a
intronintron:Solyc11g008540.1.1.5SL2.50ch11:2717363..2717525n/a+n/a
intronintron:Solyc11g008540.1.1.6SL2.50ch11:2717667..2717959n/a+n/a
intronintron:Solyc11g008540.1.1.7SL2.50ch11:2718089..2718754n/a+n/a
intronintron:Solyc11g008540.1.1.8SL2.50ch11:2718885..2718998n/a+n/a
intronintron:Solyc11g008540.1.1.9SL2.50ch11:2719099..2719363n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17970716%2Fdetails feature 17970716
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