Solanum lycopersicum mRNA Solyc11g072690.1.1

mRNA details  
Name
Solyc11g072690.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc11g072690.1.1
Length
873
  
Description
2-dehydro-3-deoxyphosphooctonate aldolase (AHRD V1 ***- B4F7V1_MAIZE); contains Interpro domain(s) IPR006269 3-deoxy-8-phosphooctulonate synthase
Location(s)
SL2.50ch11:55894265..55899304
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008152
  • GO:0009058
  • GO:0005737
Length
5040
Nb exon
13
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc11g072690.1.1 2-dehydro-3-deoxyphosphooctonate aldolase (AHRD V1 ***- B4F7V1_MAIZE); contains Interpro domain(s) IPR006269 3-deoxy-8-phosphooctulonate synthase

ATGGAATCATCATCACTGCTCTTCAACCAGCTCAAGGCAGCAGAGCCATTTTTCTTACTAGCAGGTCCAAATGTGATTGAATCTGAGGATCACATTCTTTACATGGCCAAACACTTGAAGAATATCACTTCAAAACTTGGGTTGAAGTTTGTGTTCAAGTCGAGCTTTGACAAGGCTAATCGAACCTCGTCTAAATCATTCCGTGGTCCTGGCTTGGCTGAAGGCTTGAAGATCCTTGAAAAGGTGAAAACAATATATGACATACCCATTGTAACTGATGTTCATGAATCTATTCAGTGTGAAGCAGTTGGCCGGGTTGCAGATATAATTCAAATTCCTGCTTTCTTATGTAGGCAGACCGACCTACTTGTTGCAGCTGCCAAGACTGGAAAAGTTATTAACATTAAGAAGGGCCAGTTTTGTGCTTCTTCAGTGATGGTAAATTCTGCTGAAAAAGTGAGATTGGCTGGAAATCAAAATGTCATGGTGTGTGAGAGAGGAACAATGTTTGGCTATAATGACTTGATTGTAGATCCCCGGAACTTTGAGTGGATGAGGGAGGCCAATTGCCCTGTTGTTGCTGATATAACTCATTCATTACAACAGCCAGCAGGCAAAAAGCTGGAAGGTGGTGGTGTTGCTAGTGGCGGTCTTCGTGAATTAATTCCTTGTATTGCCAGGACAGCTGTTGCTGTAGGAGTAGATGGATTATTTATGGAGGTGCACAATGATCCCCTGAGTGCTCCAGTTGATGGTCCAACACAGTGGCCTCTGCGTCATCTGGAGGAACTACTAGAAGAGCTTGTTGCGCTTGGTAGAGTTAGCAAGGGGAAGCAGCAGTTCAAAATTGATCTCACTCCATTTTGTGACTAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc11g072690.1.1SL2.50ch11:55894264..55899304291+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc11g072690.1SL2.50ch11:55894265..558993045,040+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc11g072690.1.1.1SL2.50ch11:55894265..5589430036+n/a
exonexon:Solyc11g072690.1.1.10SL2.50ch11:55897654..5589775299+n/a
exonexon:Solyc11g072690.1.1.11SL2.50ch11:55898050..5589809748+n/a
exonexon:Solyc11g072690.1.1.12SL2.50ch11:55898228..5589827548+n/a
exonexon:Solyc11g072690.1.1.13SL2.50ch11:55899248..5589930457+n/a
exonexon:Solyc11g072690.1.1.2SL2.50ch11:55894403..5589450098+n/a
exonexon:Solyc11g072690.1.1.3SL2.50ch11:55894968..5589506497+1
exonexon:Solyc11g072690.1.1.4SL2.50ch11:55895333..5589539866+n/a
exonexon:Solyc11g072690.1.1.5SL2.50ch11:55895944..5589600360+n/a
exonexon:Solyc11g072690.1.1.6SL2.50ch11:55896112..5589618675+n/a
exonexon:Solyc11g072690.1.1.7SL2.50ch11:55896371..5589645585+n/a
exonexon:Solyc11g072690.1.1.8SL2.50ch11:55896921..5589697959+2
exonexon:Solyc11g072690.1.1.9SL2.50ch11:55897105..5589714945+n/a
intronintron:Solyc11g072690.1.1.1SL2.50ch11:55894301..55894402n/a+n/a
intronintron:Solyc11g072690.1.1.10SL2.50ch11:55897753..55898049n/a+n/a
intronintron:Solyc11g072690.1.1.11SL2.50ch11:55898098..55898227n/a+n/a
intronintron:Solyc11g072690.1.1.12SL2.50ch11:55898276..55899247n/a+n/a
intronintron:Solyc11g072690.1.1.2SL2.50ch11:55894501..55894967n/a+n/a
intronintron:Solyc11g072690.1.1.3SL2.50ch11:55895065..55895332n/a+n/a
intronintron:Solyc11g072690.1.1.4SL2.50ch11:55895399..55895943n/a+n/a
intronintron:Solyc11g072690.1.1.5SL2.50ch11:55896004..55896111n/a+n/a
intronintron:Solyc11g072690.1.1.6SL2.50ch11:55896187..55896370n/a+n/a
intronintron:Solyc11g072690.1.1.7SL2.50ch11:55896456..55896920n/a+n/a
intronintron:Solyc11g072690.1.1.8SL2.50ch11:55896980..55897104n/a+n/a
intronintron:Solyc11g072690.1.1.9SL2.50ch11:55897150..55897653n/a+n/a
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