Solanum lycopersicum mRNA Solyc12g007170.1.1

mRNA details  
Name
Solyc12g007170.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc12g007170.1.1
Length
2,175
  
Description
Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding
Location(s)
SL2.50ch12:1605539..1615180
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0050662
  • GO:0006631
  • GO:0008152
  • GO:0016491
Length
9642
Nb exon
18
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc12g007170.1.1 Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding

ATGGCGAAAGCAAAAGTGACGATGGAGGTTGGGAACGACGGCGTTGCGGTTATCACATTCGTCAATCCGCCGGTGAATGCTCTTGCTATTCAAATTTTCGCTGGTTTAAAGGAGAAATGGAATGAAGCAGCTATGAGAAATGATGTCAAAGCTATTGTTCTGACTGGATATGGTGGGCGGTTTTCTGGTGGTTTTGACATCAATGTTTTCGAAAAGGTTCATAAAACAGATGATGTTTCTCTATTGCCTGATGTTTCTGTTGATCTCGTGACGAACATTATGGAAGATGGAAAGAAGCCTGCAGTGGCTGTTGTGGAAGGACTTTGTCTTGGAGGTGGCTTGGAATTGGCATTGGGATGCCATGCACGCATTGCTGCGCCAAGAACACAACTTGGGTTGCCAGAGCTTAGCCTTGGAGTTCTTCCTGGCTCTGGAGGTACACAACGACTTCCAAGGCTTATAGGGTTGTCAAAGGCTATTGATATGATGATGACATCCAAACCAATAATGTCAGAAGAGGGGGAGAAGCTAGGTCTTATTGATGCAGTTGTCCCTTCCAAAGAGTTGTTAAAAGTAGCTAGACAGTGGGCCCTTGATATTGCAGAAAGGCGCAAACCTTGGATGCGTGCCCTTCACAGGACTGACAAAATTGGTTCCCTTTCAGAAGCACATGAAGTTCTGAAGTTGGCTAGGAAACAAGTGAAGCAAACTGCTCGGAATATGCCTCAGCACTTGGCATGCCTTGATGTAATTGAAGAAGGCATAGTCCATGGTGGATATAATGGGATTCTCAAGGAAGCTAAAGTTTTTGAGGACCTTGTATTATCAGATACATCAAGAGGTCTTGTTCACGTATTTTTTGCCCAACGGGCTACATCAAAGGTACCTAATGTAACTGATATTGGTCTGAAACCAAGGTCAGTGAAGAAAGTTGCCATAATAGGTGGAGGTTTAATGGGTTCAGGCATAGCAACCTCTCTTGTTCTGAGCAACATATTTGTTATTATCAAGGAAATTAATCCTGAGTATCTTCAGAAGGGGATAAAAACAGTTGAAGCAAATATCCGAGGTTTGGTAGCGAGAAAGAAGTTGCAGCAGGACAAAGCAAACAAAGCTTTGTCAATGGTTAAAGGTGTACTGGATTACTCAGAATTTAAGGATGTGGATATGGTCATTGAGGCTGTCATTGAAAATGTTCCTCTAAAACAACAAATCTTCATTGATATTGAGAAGATTTGTCCTCCCCACTGTATTTTGGCATCCAATACATCTACTATCGACCTCAACATAATCGGGCAAAAGACGAGCTCTCAAGATCGGATTATAGGAGCACACTTTTTCAGTCCTGCTCATGTGATGCCTCTGCTAGAGATAATCCGGACGGAGAAGACATCTGCCCAAGCAATCCTCGATCTCATGGCTGTTGGCAAAACAATAAAGAAAGTACCTGTTGTAGTGGGAAACTGTACGGGTTTTGCTGTCAATAGGACATTCTTTCCATATGCCCAGAGTGCACAGTTTCTCGCGAATCTTGGAGTGGATGTCTACAGGATTGATGCACAAATCATTAACTTTGGTCTCCCCATCGGTCCATTCCAGCTTCAGGATTTAGCTGGATATGGAGTTGCTATTGCAACAGGGAAAGAGTATAGTTCGGCTTTTCCTGATAGAGTATTTATGTCTCCACTGCTTGACCTTCTAATAAAAAGTGGTCGAAATGGTAAAAATAATGGAAAAGGATACTACATTTACAAAAAGGGAGAGAAGCCAAGACCTGATCCTTCAGTTCTTCCAATTATTGAGGAGTCCAGAAGGCTCACTAATATTATGCCTGGAGGAAAGCCAATATCTATCACTGATCAAGAAATTGTTGAGATGATACTCTTTCCAGTTGTGAACGAGGCATGCCGTGTTTTGGATGAGGGGGTAGTAGTCCGAGCATCAGACCTTGATGTCGCTTCTGTACTTGGAATGAGTTTCCCATCTTACAGAGGTGGCATTGTTTTCTGGGGAGATACTGTTGGGGCTGGTCATATATATAAAAGTCTCCGCAAGTGGTCAGAAGTATATGGTAATTTCTTCAAGCCATCAAAGTTCTTGGAAGAGAGAGCAGCAAAGGGCATTCCCTTGAGCGCTCCTGCTGCTACATCTTCGACATCAAGGTCACGCATGTAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc12g007170.1.1SL2.50ch12:1605538..1615180725+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc12g007170.1SL2.50ch12:1605539..16151809,642+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc12g007170.1.1.1SL2.50ch12:1605539..160563294+n/a
exonexon:Solyc12g007170.1.1.10SL2.50ch12:1610981..1611155175+n/a
exonexon:Solyc12g007170.1.1.11SL2.50ch12:1611519..1611640122+2
exonexon:Solyc12g007170.1.1.12SL2.50ch12:1611823..1611986164+n/a
exonexon:Solyc12g007170.1.1.13SL2.50ch12:1612639..1612893255+1
exonexon:Solyc12g007170.1.1.14SL2.50ch12:1613471..1613592122+1
exonexon:Solyc12g007170.1.1.15SL2.50ch12:1613666..1613787122+2
exonexon:Solyc12g007170.1.1.16SL2.50ch12:1613907..1614055149+n/a
exonexon:Solyc12g007170.1.1.17SL2.50ch12:1614448..1614586139+1
exonexon:Solyc12g007170.1.1.18SL2.50ch12:1615136..161518045+n/a
exonexon:Solyc12g007170.1.1.2SL2.50ch12:1605724..160579572+2
exonexon:Solyc12g007170.1.1.3SL2.50ch12:1607072..160713463+2
exonexon:Solyc12g007170.1.1.4SL2.50ch12:1607224..160728057+2
exonexon:Solyc12g007170.1.1.5SL2.50ch12:1607417..160748468+2
exonexon:Solyc12g007170.1.1.6SL2.50ch12:1607567..160764882+n/a
exonexon:Solyc12g007170.1.1.7SL2.50ch12:1607747..160780256+2
exonexon:Solyc12g007170.1.1.8SL2.50ch12:1608270..1608572303+n/a
exonexon:Solyc12g007170.1.1.9SL2.50ch12:1610269..161035587+n/a
intronintron:Solyc12g007170.1.1.1SL2.50ch12:1605633..1605723n/a+n/a
intronintron:Solyc12g007170.1.1.10SL2.50ch12:1611156..1611518n/a+n/a
intronintron:Solyc12g007170.1.1.11SL2.50ch12:1611641..1611822n/a+n/a
intronintron:Solyc12g007170.1.1.12SL2.50ch12:1611987..1612638n/a+n/a
intronintron:Solyc12g007170.1.1.13SL2.50ch12:1612894..1613470n/a+n/a
intronintron:Solyc12g007170.1.1.14SL2.50ch12:1613593..1613665n/a+n/a
intronintron:Solyc12g007170.1.1.15SL2.50ch12:1613788..1613906n/a+n/a
intronintron:Solyc12g007170.1.1.16SL2.50ch12:1614056..1614447n/a+n/a
intronintron:Solyc12g007170.1.1.17SL2.50ch12:1614587..1615135n/a+n/a
intronintron:Solyc12g007170.1.1.2SL2.50ch12:1605796..1607071n/a+n/a
intronintron:Solyc12g007170.1.1.3SL2.50ch12:1607135..1607223n/a+n/a
intronintron:Solyc12g007170.1.1.4SL2.50ch12:1607281..1607416n/a+n/a
intronintron:Solyc12g007170.1.1.5SL2.50ch12:1607485..1607566n/a+n/a
intronintron:Solyc12g007170.1.1.6SL2.50ch12:1607649..1607746n/a+n/a
intronintron:Solyc12g007170.1.1.7SL2.50ch12:1607803..1608269n/a+n/a
intronintron:Solyc12g007170.1.1.8SL2.50ch12:1608573..1610268n/a+n/a
intronintron:Solyc12g007170.1.1.9SL2.50ch12:1610356..1610980n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17993102%2Fdetails feature 17993102
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