Solanum lycopersicum mRNA Solyc12g044880.1.1
 mRNA details
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| Name | Type | Organism | |
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Synonyms / aliases
mRNA:Solyc12g044880.1.1
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Length
2,508
|
|
Description
Beta-galactosidase (AHRD V1 ***- Q546T5_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35
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Location(s)
SL2.50ch12:37635058..37641072
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0005529
- GO:0005975
- Length
- 6015
- Nb exon
- 19
- Sifter term
- GO:0005515
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc12g044880.1.1 Beta-galactosidase (AHRD V1 ***- Q546T5_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35
ATGGGTTTTTGGATGGCAATGTTGCTGATGTTGTTATTGTGTTTATGGGTTTCTTGTGGAATTGCTTCTGTTTCATATGACCATAAAGCTATCATTGTAAATGGACAAAGAAAAATTCTCATTTCTGGATCCATTCACTACCCTAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAAGAAGGGGGAGTTGATGTTATACAGACTTATGTTTTCTGGAATGGGCATGAGCCTGAAGAAGGGAAATATTATTTTGAAGAGAGGTATGATTTAGTGAAGTTCATTAAAGTGGTGCAAGAAGCAGGACTTTATGTGCATCTTAGGATTGGACCTTATGCATGTGCTGAATGGAATTTTGGGGGTTTTCCTGTTTGGCTGAAGTATGTTCCAGGTATTAGTTTCAGAACAAACAATGAGCCATTCAAGGCTGCAATGCAAAAGTTCACTACTAAGATTGTTGATATGATGAAAGCAGAAAAGCTCTATGAAACTCAGGGTGGTCCAATTATTCTATCTCAGATAGAAAATGAATATGGACCTATGGAGTGGGAACTAGGTGAACCTGGTAAAGTTTACTCAGAATGGGCAGCCAAAATGGCTGTGGATCTTGGCACTGGTGTCCCATGGATCATGTGCAAGCAAGATGATGTCCCTGATCCTATTATTAATACTTGCAATGGTTTCTACTGTGACTACTTCACACCAAATAAGGCTAATAAACCCAAGATGTGGACTGAAGCCTGGACAGCCTGGTTTACCGAATTTGGAGGTCCAGTTCCTTACCGTCCTGCAGAGGATATGGCATTTGCTGTCGCAAGATTTATACAAACGGGAGGCTCCTTCATCAATTACTATATGTATCATGGAGGAACAAACTTTGGAAGGACTTCTGGTGGCCCATTTATTGCTACTAGTTATGATTATGATGCACCCCTAGATGAATTTGGGTCATTACGGCAGCCTAAATGGGGTCATCTGAAAGATCTACATAGAGCAATAAAGCTCTGTGAGCCAGCTTTAGTATCTGTAGATCCAACTGTGACATCCTTAGGAAACTATCAAGAGGCACGTGTTTTCAAGTCAGAGTCTGGGGCCTGCGCTGCCTTCCTAGCAAATTACAACCAGCACTCTTTTGCTAAAGTGGCATTTGGGAACATGCATTATAACTTGCCACCCTGGTCTATCAGCATTCTTCCCGACTGCAAGAACACTGTCTATAATACTGCAAGGGTTGGTGCTCAAAGTGCTCAGATGAAGATGACTCCAGTCAGTAGAGGATTCTCATGGGAGTCATTCAATGAAGACGCAGCATCGCATGAAGACGACACTTTCACAGTTGTTGGGTTATTGGAGCAGATTAATATCACAAGAGATGTATCTGATTACTTGTGGTATATGACTGACATTGAGATTGATCCAACAGAAGGATTTTTGAATAGTGGAAATTGGCCTTGGCTTACTGTCTTCTCTGCTGGCCATGCATTGCATGTATTCGTGAATGGTCAATTAGCAGGAACTGTGTACGGAAGTTTAGAAAACCCAAAACTAACTTTCAGCAACGGTATAAATCTGAGAGCTGGTGTGAACAAGATTTCTCTGCTAAGCATTGCTGTTGGTCTTCCGAACGTTGGCCCTCATTTTGAGACATGGAATGCTGGTGTTCTTGGACCAGTTTCACTTAATGGACTTAATGAAGGAACAAGAGATTTAACATGGCAGAAATGGTTCTACAAGGTTGGTCTAAAAGGAGAAGCCCTGAGTCTTCATTCACTCAGTGGTAGCCCATCCGTGGAGTGGGTGGAAGGCTCTTTAGTGGCTCAGAAGCAGCCACTCAGTTGGTATAAGACTACATTCAATGCTCCAGATGGAAATGAACCTTTGGCTTTAGATATGAATACCATGGGCAAAGGTCAAGTATGGATAAATGGTCAGAGCCTCGGACGCCACTGGCCTGCATATAAATCATCTGGAAGTTGTAGTGTCTGTAACTATACTGGCTGGTTTGATGAGAAAAAGTGCCTAACTAACTGTGGTGAGGGCTCACAAAGATGGTACCACGTACCCCGGTCTTGGCTGTATCCTACTGGAAATTTGTTAGTTGTATTCGAGGAATGGGGAGGAGATCCTTATGGAATCACTTTAGTCAAAAGAGAAATAGGGAGTGTTTGTGCTGATATATATGAGTGGCAACCACAGTTATTGAATTGGCAGAGGCTAGTATCTGGTAAGTTTGACAGACCTCTCAGACCTAAAGCCCATCTTAAGTGTGCACCTGGTCAGAAGATTTCTTCAATCAAATTTGCAAGCTTTGGAACACCAGAGGGAGTTTGTGGGAACTTCCAGCAGGGAAGCTGCCATGCTCCGCGCTCATATGATGCTTTCAAAAAGAATTGTGTTGGGAAAGAGTCTTGCTCAGTACAGGTAACACCAGAGAATTTTGGAGGTGATCCATGTCGAAACGTTCTAAAGAAACTCTCAGTGGAAGCCATTTGTAGTTGA
ATGGGTTTTTGGATGGCAATGTTGCTGATGTTGTTATTGTGTTTATGGGTTTCTTGTGGAATTGCTTCTGTTTCATATGACCATAAAGCTATCATTGTAAATGGACAAAGAAAAATTCTCATTTCTGGATCCATTCACTACCCTAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAAGAAGGGGGAGTTGATGTTATACAGACTTATGTTTTCTGGAATGGGCATGAGCCTGAAGAAGGGAAATATTATTTTGAAGAGAGGTATGATTTAGTGAAGTTCATTAAAGTGGTGCAAGAAGCAGGACTTTATGTGCATCTTAGGATTGGACCTTATGCATGTGCTGAATGGAATTTTGGGGGTTTTCCTGTTTGGCTGAAGTATGTTCCAGGTATTAGTTTCAGAACAAACAATGAGCCATTCAAGGCTGCAATGCAAAAGTTCACTACTAAGATTGTTGATATGATGAAAGCAGAAAAGCTCTATGAAACTCAGGGTGGTCCAATTATTCTATCTCAGATAGAAAATGAATATGGACCTATGGAGTGGGAACTAGGTGAACCTGGTAAAGTTTACTCAGAATGGGCAGCCAAAATGGCTGTGGATCTTGGCACTGGTGTCCCATGGATCATGTGCAAGCAAGATGATGTCCCTGATCCTATTATTAATACTTGCAATGGTTTCTACTGTGACTACTTCACACCAAATAAGGCTAATAAACCCAAGATGTGGACTGAAGCCTGGACAGCCTGGTTTACCGAATTTGGAGGTCCAGTTCCTTACCGTCCTGCAGAGGATATGGCATTTGCTGTCGCAAGATTTATACAAACGGGAGGCTCCTTCATCAATTACTATATGTATCATGGAGGAACAAACTTTGGAAGGACTTCTGGTGGCCCATTTATTGCTACTAGTTATGATTATGATGCACCCCTAGATGAATTTGGGTCATTACGGCAGCCTAAATGGGGTCATCTGAAAGATCTACATAGAGCAATAAAGCTCTGTGAGCCAGCTTTAGTATCTGTAGATCCAACTGTGACATCCTTAGGAAACTATCAAGAGGCACGTGTTTTCAAGTCAGAGTCTGGGGCCTGCGCTGCCTTCCTAGCAAATTACAACCAGCACTCTTTTGCTAAAGTGGCATTTGGGAACATGCATTATAACTTGCCACCCTGGTCTATCAGCATTCTTCCCGACTGCAAGAACACTGTCTATAATACTGCAAGGGTTGGTGCTCAAAGTGCTCAGATGAAGATGACTCCAGTCAGTAGAGGATTCTCATGGGAGTCATTCAATGAAGACGCAGCATCGCATGAAGACGACACTTTCACAGTTGTTGGGTTATTGGAGCAGATTAATATCACAAGAGATGTATCTGATTACTTGTGGTATATGACTGACATTGAGATTGATCCAACAGAAGGATTTTTGAATAGTGGAAATTGGCCTTGGCTTACTGTCTTCTCTGCTGGCCATGCATTGCATGTATTCGTGAATGGTCAATTAGCAGGAACTGTGTACGGAAGTTTAGAAAACCCAAAACTAACTTTCAGCAACGGTATAAATCTGAGAGCTGGTGTGAACAAGATTTCTCTGCTAAGCATTGCTGTTGGTCTTCCGAACGTTGGCCCTCATTTTGAGACATGGAATGCTGGTGTTCTTGGACCAGTTTCACTTAATGGACTTAATGAAGGAACAAGAGATTTAACATGGCAGAAATGGTTCTACAAGGTTGGTCTAAAAGGAGAAGCCCTGAGTCTTCATTCACTCAGTGGTAGCCCATCCGTGGAGTGGGTGGAAGGCTCTTTAGTGGCTCAGAAGCAGCCACTCAGTTGGTATAAGACTACATTCAATGCTCCAGATGGAAATGAACCTTTGGCTTTAGATATGAATACCATGGGCAAAGGTCAAGTATGGATAAATGGTCAGAGCCTCGGACGCCACTGGCCTGCATATAAATCATCTGGAAGTTGTAGTGTCTGTAACTATACTGGCTGGTTTGATGAGAAAAAGTGCCTAACTAACTGTGGTGAGGGCTCACAAAGATGGTACCACGTACCCCGGTCTTGGCTGTATCCTACTGGAAATTTGTTAGTTGTATTCGAGGAATGGGGAGGAGATCCTTATGGAATCACTTTAGTCAAAAGAGAAATAGGGAGTGTTTGTGCTGATATATATGAGTGGCAACCACAGTTATTGAATTGGCAGAGGCTAGTATCTGGTAAGTTTGACAGACCTCTCAGACCTAAAGCCCATCTTAAGTGTGCACCTGGTCAGAAGATTTCTTCAATCAAATTTGCAAGCTTTGGAACACCAGAGGGAGTTTGTGGGAACTTCCAGCAGGGAAGCTGCCATGCTCCGCGCTCATATGATGCTTTCAAAAAGAATTGTGTTGGGAAAGAGTCTTGCTCAGTACAGGTAACACCAGAGAATTTTGGAGGTGATCCATGTCGAAACGTTCTAAAGAAACTCTCAGTGGAAGCCATTTGTAGTTGA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
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| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc12g044880.1.1 | SL2.50ch12:37635057..37641072 | 836 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc12g044880.1 | SL2.50ch12:37635058..37641072 | 6,015 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc12g044880.1.1.1 | SL2.50ch12:37640914..37641072 | 159 | - | n/a |
| exon | exon:Solyc12g044880.1.1.10 | SL2.50ch12:37637673..37637791 | 119 | - | 2 |
| exon | exon:Solyc12g044880.1.1.11 | SL2.50ch12:37637424..37637588 | 165 | - | n/a |
| exon | exon:Solyc12g044880.1.1.12 | SL2.50ch12:37637114..37637286 | 173 | - | n/a |
| exon | exon:Solyc12g044880.1.1.13 | SL2.50ch12:37636891..37637000 | 110 | - | 1 |
| exon | exon:Solyc12g044880.1.1.14 | SL2.50ch12:37636597..37636706 | 110 | - | 2 |
| exon | exon:Solyc12g044880.1.1.15 | SL2.50ch12:37636292..37636402 | 111 | - | n/a |
| exon | exon:Solyc12g044880.1.1.16 | SL2.50ch12:37636116..37636226 | 111 | - | n/a |
| exon | exon:Solyc12g044880.1.1.17 | SL2.50ch12:37635727..37635932 | 206 | - | n/a |
| exon | exon:Solyc12g044880.1.1.18 | SL2.50ch12:37635306..37635642 | 337 | - | 1 |
| exon | exon:Solyc12g044880.1.1.19 | SL2.50ch12:37635058..37635168 | 111 | - | n/a |
| exon | exon:Solyc12g044880.1.1.2 | SL2.50ch12:37640679..37640774 | 96 | - | n/a |
| exon | exon:Solyc12g044880.1.1.3 | SL2.50ch12:37640479..37640591 | 113 | - | n/a |
| exon | exon:Solyc12g044880.1.1.4 | SL2.50ch12:37640338..37640404 | 67 | - | 1 |
| exon | exon:Solyc12g044880.1.1.5 | SL2.50ch12:37640150..37640242 | 93 | - | n/a |
| exon | exon:Solyc12g044880.1.1.6 | SL2.50ch12:37639909..37640052 | 144 | - | n/a |
| exon | exon:Solyc12g044880.1.1.7 | SL2.50ch12:37638959..37639047 | 89 | - | n/a |
| exon | exon:Solyc12g044880.1.1.8 | SL2.50ch12:37638748..37638853 | 106 | - | 1 |
| exon | exon:Solyc12g044880.1.1.9 | SL2.50ch12:37638560..37638647 | 88 | - | n/a |
| intron | intron:Solyc12g044880.1.1.1 | SL2.50ch12:37640775..37640913 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.10 | SL2.50ch12:37637589..37637672 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.11 | SL2.50ch12:37637287..37637423 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.12 | SL2.50ch12:37637001..37637113 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.13 | SL2.50ch12:37636707..37636890 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.14 | SL2.50ch12:37636403..37636596 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.15 | SL2.50ch12:37636227..37636291 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.16 | SL2.50ch12:37635933..37636115 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.17 | SL2.50ch12:37635643..37635726 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.18 | SL2.50ch12:37635169..37635305 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.2 | SL2.50ch12:37640592..37640678 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.3 | SL2.50ch12:37640405..37640478 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.4 | SL2.50ch12:37640243..37640337 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.5 | SL2.50ch12:37640053..37640149 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.6 | SL2.50ch12:37639048..37639908 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.7 | SL2.50ch12:37638854..37638958 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.8 | SL2.50ch12:37638648..37638747 | n/a | - | n/a |
| intron | intron:Solyc12g044880.1.1.9 | SL2.50ch12:37637792..37638559 | n/a | - | n/a |
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