Clone hba-52n9

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Clone
Clone name
hba-52n9
LE_HBa0052N09
C06HBa0052N09
P052N09
Clone type
BAC
Contamination
none
Estimated length
108,996
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg1955 : [coherent], 4 members:
LE_HBa0052F03, C06HBa0052N09, C06HBa0128E05, LE_HBa0309H13
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1639Tomato-EXPEN 2000plate 5F5
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 6
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 6 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 6
HTGS phase
1 - fragmented, unordered
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
114,525 bp
C06HBa0052N09.1
AC211031.1 (GenBank) 		[View]
End Sequences
Warnings
  • sequence is not finished to HTGS3
 FTP
Chromosome 6 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (29)
1293, 1421, 1503, 1569, 1682, 1995, 2190, 2276, 2276, 2377, 2517, 2623, 2725, 3479, 3617, 3821, 3990, 3990, 4259, 4259, 4769, 4769, 5635, 5778, 5778, 6036, 6276, 6933, 9160
HindIII in silico (32)
1067, 1157, 1181, 1206, 1277, 1408, 1522, 1575, 1585, 1964, 2188, 2278, 2284, 2362, 2402, 2541, 2645, 2933, 3493, 3958, 4030, 4032, 4196, 4280, 4618, 4708, 5451, 5454, 5523, 6109, 6558, 9165
Fragment Lengths Match Score
0.93
Annotations  
Browse
LE_HBa0052N09 has no browsable sequence annotations
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e.g. AP009318.1 or AP009318
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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