Clone hba-126f9

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Clone
Clone name
hba-126f9
LE_HBa0126F09
C01HBa0126F09
P126F09
Clone type
BAC
Contamination
none
Estimated length
188,261
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TM27Tomato-EXPEN 2000plate 9B6
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH map 
View on FISH map chromosome 1
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
555-02 1CompositeFluorescencePhase21.5%
555-06 1CompositeFluorescencePhase23.8%
555-08 1CompositeFluorescencePhase20.0%
555-11 1CompositeFluorescencePhase20.1%
555-13 1CompositeFluorescencePhase20.9%
555-15 1CompositeFluorescencePhase20.0%
555-16 1CompositeFluorescencePhase22.3%
555-22 1CompositeFluorescencePhase23.5%
555-23 1CompositeFluorescencePhase20.0%
555-26 1CompositeFluorescencePhase18.1%
555-28 1CompositeFluorescencePhase19.8%
555-32 1CompositeFluorescencePhase19.0%
555-33 1CompositeFluorescencePhase20.6%
Mean±sd20.7%±1.7%

Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 4.2µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
UK
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
127,992 bp
C01HBa0126F09.3
AC238908.8 (GenBank) 		[View]
End Sequences
Warnings
none
FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (28)
1256, 1512, 1577, 1825, 1853, 2618, 2662, 2736, 2736, 3716, 4034, 4158, 4158, 4315, 4356, 4687, 5486, 6505, 6505, 6824, 7078, 9422, 9903, 13270, 15137, 15137, 20889, 23906
HindIII in silico (24)
1034, 1307, 1309, 1801, 1869, 1894, 2074, 2386, 2557, 2582, 2825, 2908, 3434, 4035, 4219, 5049, 5963, 7039, 7628, 7825, 9377, 9928, 14716, 19681
Fragment Lengths Match Score
0.88
Annotations  
Browse
LE_HBa0126F09 has no browsable sequence annotations
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temporarily unavailable
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 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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