Clone hba-5d6

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Clone
Clone name
hba-5d6
LE_HBa0005D06
C10HBa0005D06
P005D06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cTOB-8-M7Tomato-EXPEN 2000plate 15E10
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLAST 
MarkerEvalueIdentity %ScoreParams
cTOB-8-M74e-18187.70evalue cutoff: 1e-10; min len = 25; min identity=0.96
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 10
FISH map 
View on FISH map chromosome 10
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
550-07 1CompositeFluorescencePhase74.5%
550-08 1CompositeFluorescencePhase73.3%
550-10 1CompositeFluorescencePhase71.3%
550-11 1CompositeFluorescencePhase79.1%
550-14 1CompositeFluorescencePhase78.8%
550-17 1CompositeFluorescencePhase78.2%
550-30 1CompositeFluorescencePhase77.7%
Mean±sd76.1%±3.1%

Given an estimated length of 10.1µm for chromosome 10Q and the mean percentage above, this BAC is approximately 7.7µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 10
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
17,423 bp
C10HBa0005D06.5
AC239739.6 (GenBank) 		[View]
End Sequences
Warnings
none
FTP
Chromosome 10 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Annotations  
Browse
LE_HBa0005D06 has no browsable sequence annotations
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Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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