Clone hba-111f22

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Clone
Clone name
hba-111f22
LE_HBa0111F22
C07HBa0111F22
P111F22
Clone type
BAC
Contamination
none
Estimated length
102,511
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3594 : [coherent], 4 members:
C07HBa0007H24, C07HBa0095C18, C07HBa0111F22, LE_HBa0168F12
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T0846Tomato-EXPEN 2000plate 7B12
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 7
FISH map 
View on FISH map chromosome 7
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
343-01 1CompositeFluorescencePhase94.5%
639-01 1CompositeFluorescencePhase92.8%
343-02 1CompositeFluorescencePhase94.8%
639-02 1CompositeFluorescencePhase92.0%
639-03 1CompositeFluorescencePhase95.1%
343-04 1CompositeFluorescencePhase95.8%
639-04 1CompositeFluorescencePhase91.5%
343-06 1CompositeFluorescencePhase97.2%
343-10 1CompositeFluorescencePhase96.1%
343-11 1CompositeFluorescencePhase94.6%
343-12 1CompositeFluorescencePhase92.8%
343-14 1CompositeFluorescencePhase93.4%
343-16 1CompositeFluorescencePhase94.6%
639-16 1CompositeFluorescencePhase97.1%
343-18 1CompositeFluorescencePhase92.8%
343-19 1CompositeFluorescencePhase93.5%
639-19 1CompositeFluorescencePhase97.1%
639-20 1CompositeFluorescencePhase94.8%
639-21 1CompositeFluorescencePhase94.4%
343-24 1CompositeFluoroescencePhase92.3%
343-26 1CompositeFluorescencePhase92.3%
343-27 1CompositeFluorescencePhase95.8%
639-31 1CompositeFluorescencePhase96.2%
639-34 1CompositeFluorescencePhase90.0%
639-37 1CompositeFluorescencePhase94.9%
639-38a 1CompositeFluorescencePhase96.6%
639-38b 1CompositeFluorescencePhase98.8%
639-40a 1CompositeFluorescencePhase99.7%
639-40b 1CompositeFluorescencePhase95.3%
639-44 1CompositeFluorescencePhase98.1%
639-46 1CompositeFluorescencePhase98.0%
639-48 1CompositeFluorescencePhase97.0%
Mean±sd95.0%±2.3%

Given an estimated length of 5.8µm for chromosome 7P and the mean percentage above, this BAC is approximately 5.5µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 7 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 7
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'france'
Full Sequence
116,491 bp
C07HBa0111F22.2
AC212630.2 (GenBank) 		[View]
End Sequences
Warnings
  • sequence is not finished to HTGS3
 FTP
Chromosome 7 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (27)
1263, 1315, 1398, 1646, 1663, 1754, 1974, 2028, 2061, 2142, 2142, 2339, 2495, 3216, 3376, 3412, 3560, 3560, 3763, 3955, 4000, 4129, 4342, 4972, 6426, 12787, 16793
HindIII in silico (30)
1110, 1124, 1183, 1252, 1295, 1384, 1668, 1676, 1753, 1961, 2023, 2058, 2157, 2159, 2376, 2530, 3232, 3382, 3504, 3591, 3608, 3638, 3866, 4007, 4049, 4169, 4342, 6341, 14948, 16232
Fragment Lengths Match Score
0.93
Annotations  
Browse
LE_HBa0111F22 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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