Clone hba-270a17

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Clone
Clone name
hba-270a17
LE_HBa0270A17
C08HBa0270A17
P270A17
Clone type
BAC
Contamination
none
Estimated length
83,348
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg5365 : [coherent], 1 members:
C08HBa0270A17
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG176Tomato-EXPEN 2000plate 1A8
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 8
FISH map 
View on FISH map chromosome 8
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
634-03 1CompositeFluorescencePhase87.2%
643-05 1CompositeFluorescencePhase80.0%
634-11 1CompositeFluorescencePhase80.0%
634-14 1CompositeFluorescencePhase82.2%
634-18 1CompositeFluorescencePhase81.7%
643-19 1CompositeFluorescencePhase77.3%
643-33 1CompositeFluorescencePhase87.6%
643-38 1CompositeFluorescencePhase81.8%
643-40 1CompositeFluorescencePhase87.4%
Mean±sd82.8%±3.7%

Given an estimated length of 4.9µm for chromosome 8P and the mean percentage above, this BAC is approximately 4.1µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 8 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 8
HTGS phase
none
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
118,168 bp
C08HBa0270A17.1
[View]
End Sequences
None
Warnings
  • sequence length 118,168 is 41.8% different from estimated length 83,348
 FTP
Chromosome 8 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (12)
2899, 4557, 4668, 5092, 5917, 6294, 6733, 7491, 8257, 9351, 10333, 11756
HindIII in silico (21)
1025, 1051, 1196, 1688, 2265, 2397, 2557, 2889, 4481, 4608, 4890, 5570, 6116, 6732, 7413, 8196, 8268, 9354, 10239, 11388, 11790
Fragment Lengths Match Score
0.71
Annotations  
Browse
LE_HBa0270A17 has no browsable sequence annotations
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 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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