Clone Read LE_HBa0144A07_SP6_100236

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0144A07_SP6_100236
Primer
SP6
ID from Seq. Facility
LE_HBa_144_A07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
474 trimmed for vector and quality, 868 raw
Genbank Accession
DU091211
Sequence
>LE_HBa0144A07_SP6_100236 (raw untrimmed)
GTTATGCGGTTTGGTCCATCACCTAATTCTACTTTTCTGGTAATCTACTATCAATCATTGATATTTTAGATTTCCTTGTATATATGTATATACAGTATAT
GATTCCTTGCCTTGCTTGTGTAACGTTTATATACTGTTGCAGGATGTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATG
TCGTTGTTTTTACAAGTGTGTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTT
ACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGG
TCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAATAAAACTTTTCATTTACACAG
TACTTCCTTTTGTGGCATTCTGACTATAATATTGTCCATCTTGTTATTTTTGACACTATTTTTTGATGTAATTATTTCTTCTTCTCTATACTTGACTTGT
GTATTCATGTATATGTTTCAGATTTATTATAGCAATAACTGCTACTTTATTCTCATTTTTTTTATTTATATTTGTACTTATTTTTAAATGAGTATACTTT
TTTTTCACTCTCTCTTAGTTCATATTCTTACTCTGTTCATTTTAAATTTCTTTTATTTATATATTAATTTCCTTTTTCCTCTTTTTTTTTTTTTTTTTTT
TTTACTTCTTTTATTCTATTCTTCATTACTCTTTTGTTGCTTTAATAAGACTTCTTATATACTCGTAT
>LE_HBa0144A07_SP6_100236 (trimmed for quality and cloning vector)
CACCTAATTCTACTTTTCTGGTAATCTACTATCAATCATTGATATTTTAGATTTCCTTGTATATATGTATATACAGTATATGATTCCTTGCCTTGCTTGT
GTAACGTTTATATACTGTTGCAGGATGTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATGTCGTTGTTTTTACAAGTGT
GTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGC
AAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCT
AGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAATAAAACTTTTCATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954018
Expected error %
0.212049
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g61110.1 Score 75 E Value 2e-14 Identity 20.90% Align. Length 176bp (37.13%) Frame 1
68416.m06839 40S ribosomal protein S27 (ARS27A) identical to cDNA ribosomal protein S27 (ARS27A) GI:4193381
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g47930.1 Score 72 E Value 1e-13 Identity 20.30% Align. Length 176bp (37.13%) Frame 1
68418.m05921 40S ribosomal protein S27 (RPS27D)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV50048.1| Score 75 E Value 6e-14 Identity 82.10% Align. Length 241bp (50.84%) Frame 2
S27 ribosomal protein [Saccharum hybrid cultivar] gb|AAC97381.1| 40S ribosomal protein S27 homolog [Zea mays]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV50037.1| Score 75 E Value 6e-14 Identity 82.10% Align. Length 241bp (50.84%) Frame 2
ribosomal protein S27 [Saccharum hybrid cultivar]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0144A07
Clone
Clone name
hba-144a7
LE_HBa0144A07
P144A07
Clone type
BAC
Contamination
none
Estimated length
85,871
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found