Clone Read LE_HBa0049J09_SP6_10048

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0049J09_SP6_10048
Primer
SP6
ID from Seq. Facility
LE_HBa_049_J09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
830 trimmed for vector and quality, 969 raw
Genbank Accession
Sequence
>LE_HBa0049J09_SP6_10048 (raw untrimmed)
AAAAAAAAAGGGTTTTCTTTNTCTAGGTATTGAGAGTGTTTAGTCCTCAAAGTTATCTTCCTTCTATTTCGTGAAACTTAATCTTTTATCGTAAGACATA
GTGATTTTTTCATTTGGTATTTTTTTCATTTTGTTAAAAATTTCAGTTAGGATGATTGAAAATTGATCTTCTCTTTTCGTCTTTCTATAAGTTTTCATAC
ACTTTTTAGGAAAATTGTTTGTGATTTGTGCTATATTTGATAGCACACAACAATAATATGCGATAACTAACACGAAGATAATGGTGAATTTGTTAGAAGA
ATCAAACAAATTGTTCTCTTGCTATCTACGATTAGTATATATTTTGATTGTTTTTTCTTAGAAACAAAATTTTGTATGTCATTGCACTTTTCCAAGAATA
TTAGTATAAAGACAATCAGTCCACTTCTTTTATCGCAAGTTGAGTAATTTGTCATATTTCTTCCTCTTTTCTTTTTGGAAATAATAAGTGATTAAACTTT
CATGAAACTAACAGAATAATGAATAACTATGCACATTAACAAAGTATGCTAGAACTTTTATTGACAGTAGTTAATTGTCATTACATCCAACGTAGCTAAA
GACTTTAGGGACATTTATAGAAAGTATTGCCAGAAAATATATATTTAGCGGCAACTCGCCAAACTATCTTTCTGAAAAAATGTTAAGTAACATGTCTTTT
TTTTCTTGATTATTATGAAAGTAAGATTGTCTTTATTATTAGTTATGGATATTTGTAAGTTCACTACTCACAAAATTATACTGTAAGATTTTGATATGTC
ATGTATCAATATTTTGATTTAGATAAAATACTTAATTACCCCATGGAACTTATACCTTTTTTCAAGTAGACACCTTAAGTTTGTGGGGGTCTATCCACCC
ACAAAATCTCAAAAACACGATAAATATTCATTTTTCACATCAGCGCTTGTGCGCCCCTTTTTGCAAAAA
>LE_HBa0049J09_SP6_10048 (trimmed for quality and cloning vector)
GAGAGTGTTTAGTCCTCAAAGTTATCTTCCTTCTATTTCGTGAAACTTAATCTTTTATCGTAAGACATAGTGATTTTTTCATTTGGTATTTTTTTCATTT
TGTTAAAAATTTCAGTTAGGATGATTGAAAATTGATCTTCTCTTTTCGTCTTTCTATAAGTTTTCATACACTTTTTAGGAAAATTGTTTGTGATTTGTGC
TATATTTGATAGCACACAACAATAATATGCGATAACTAACACGAAGATAATGGTGAATTTGTTAGAAGAATCAAACAAATTGTTCTCTTGCTATCTACGA
TTAGTATATATTTTGATTGTTTTTTCTTAGAAACAAAATTTTGTATGTCATTGCACTTTTCCAAGAATATTAGTATAAAGACAATCAGTCCACTTCTTTT
ATCGCAAGTTGAGTAATTTGTCATATTTCTTCCTCTTTTCTTTTTGGAAATAATAAGTGATTAAACTTTCATGAAACTAACAGAATAATGAATAACTATG
CACATTAACAAAGTATGCTAGAACTTTTATTGACAGTAGTTAATTGTCATTACATCCAACGTAGCTAAAGACTTTAGGGACATTTATAGAAAGTATTGCC
AGAAAATATATATTTAGCGGCAACTCGCCAAACTATCTTTCTGAAAAAATGTTAAGTAACATGTCTTTTTTTTCTTGATTATTATGAAAGTAAGATTGTC
TTTATTATTAGTTATGGATATTTGTAAGTTCACTACTCACAAAATTATACTGTAAGATTTTGATATGTCATGTATCAATATTTTGATTTAGATAAAATAC
TTAATTACCCCATGGAACTTATACCTTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.908849
Expected error %
0.0683997
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0049J09
Clone
Clone name
hba-49j9
LE_HBa0049J09
C12HBa0049J09
P049J09
Clone type
BAC
Contamination
none
Estimated length
79,864
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found