Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0144I20_T7_100647

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0144I20_T7_100647
Primer
T7
ID from Seq. Facility
LE_HBa_144_I20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
326 trimmed for vector and quality, 891 raw
Genbank Accession
DU091460
Sequence
>LE_HBa0144I20_T7_100647 (raw untrimmed)
ATCCCTGGGTCCCCGGGGTACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCTTAATCTACTCAGTTTGCCTGTACATAACTGCTAGCAAAATTTTG
ATGGCAGGTTATTTCCATTGAGCACATGGAGAATGATGAGAGTGTCACCCACAATTACTACCACCCTTACATCAGGGCTGGGCTGGGGTTTGGTGCCCAA
CGGTGGATCACCACCCTACAAAAGCAATGCAAGTTCATAACATTCATGTCTTCTCCTGTGCCCAGTGGTGATAATACAAGTATATCACTTCATATCATTC
ATTCAACACTCTACAACTTTGAAATGATAATGGATTCTAAACAAATTTCATTATAGTCACTGCTAAGTTCCACTACACGGAAAAATATTACATAAGATAG
ATCCACGCAATTCTCGACACTTTTGCCATGGTGTAAGTGCCCCATATTAGAAGAGGAAACAAATTTAATCAATAATAGCCAATTAGAGAAGTATAAATTA
TAAATATTTTTCTTAGTTAAAATCATGACCTTAATACAAAAAAGATAAAATCGCATTTAAACATTCCTCTTTTTCAAGTTTTATTTTTTTATTTCTTATT
TCTATATTATATAATATATTTTTTTATATTTATTTTGTTATACTTCTTTATATCATTATTAAATACATTTTCATACAATTAATTTTTTACTTTTTTATCT
ACTTATTTACTCACCTAACCTTATAAAGCTTCTCTTCAAATTTTTCCTTATAAATAATATAAATCACCAATAACTCTTTATAAGCATTGCTAGTCATTAT
CCCACTAATATCTTTTTCCCTCTTTTATATTTTTCCCTTTTTCTCTTCTTATAATTTTCTTTTTTTTATTATTTTTTTTTTTTTTCTATTG
>LE_HBa0144I20_T7_100647 (trimmed for quality and cloning vector)
AGCTTGTCTTAATCTACTCAGTTTGCCTGTACATAACTGCTAGCAAAATTTTGATGGCAGGTTATTTCCATTGAGCACATGGAGAATGATGAGAGTGTCA
CCCACAATTACTACCACCCTTACATCAGGGCTGGGCTGGGGTTTGGTGCCCAACGGTGGATCACCACCCTACAAAAGCAATGCAAGTTCATAACATTCAT
GTCTTCTCCTGTGCCCAGTGGTGATAATACAAGTATATCACTTCATATCATTCATTCAACACTCTACAACTTTGAAATGATAATGGATTCTAAACAAATT
TCATTATAGTCACTGCTAAGTTCCAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.960605
Expected error %
2.31579
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g00730.1 Score 69 E Value 5e-13 Identity 17.50% Align. Length 182bp (55.83%) Frame 2
68417.m00099 anthocyaninless2 (ANL2) nearly identical to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB41901.1| Score 70 E Value 1e-11 Identity 17.70% Align. Length 185bp (56.75%) Frame 2
homeodomain protein AHDP [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD47139.1| Score 70 E Value 2e-11 Identity 18.00% Align. Length 182bp (55.83%) Frame 2
Anthocyaninless2 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0144I20
Clone
Clone name
hba-144i20
LE_HBa0144I20
P144I20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found