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Clone Read LE_HBa0049M07_T7_10189

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0049M07_T7_10189
Primer
T7
ID from Seq. Facility
LE_HBa_049_M07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
638 trimmed for vector and quality, 884 raw
Genbank Accession
DU029193
Sequence
>LE_HBa0049M07_T7_10189 (raw untrimmed)
TTGGTGCAATTACCTCACGGAATGGCTGGATACTAGGGAGAAACACCTGTCGCAGTGCAGTCCACTCACAACCCAGCCACAAATGAGATTCGTGAAGAAA
TGGCTCAGATGAGAACTGAGCTTGGTTTGGTACTAAAACATGTCACTGGGGGTGCAGAAAAGATAAATACAGTCAACTACTTGGCTAAACCACCACCTCC
TAATGATGAATGCTATTATGCGGAGGACACTTATGCAGTAAATGAGCAGACGGGGGGTTTCCGACCTAGCGCATAAATTTTTTATCTAAGATGAGTAAGT
CTTCCTCTGAGTTAAGTAAGCCAGGCGAAGGGTTCGCTTGGGGGCCAGCAATGGTCTTCGAGTGCCGACCACGTCCAGCGTATAGGCTCCGGGCGTGACA
ATTTTTCATTTTCCGAAAGGATAATTGCATTTTTTAGTTACCAAAAAAGTCATTGCATTTTTCATTTTGTGAAAGGATAATTGCATTTTTCATCGCCAAA
AAGGTCATTGCATATTTTATGTACCGACAAGGTCATTGATTTTTTATTTTTTGAAAGGATAATTGCATTTTTAATTTGCCAAGAGGGTCATTGCATTTTT
TATATTCTGAAAGGATAATTGCATTTTTCATTTGCCAAGATATTCATTGCATATTTTATTAACAAAAAAGTCATTACCTTTTTTCTTTTTAGAAAGGATA
ATTGCATTTTTCATTTTTCAAGAGGGTCATTGCATTTTTCATTCGCCGAGAAGGGCATTGCATTGAAGTTGCTTCTATTTTAAAGGTGAAGGATGTGCCC
CCTATCTATTCACGTTTAAGTTGGGTGAAACTTGTGGTGAAAGATATTTGCATTTAGTTCGCTCTATTCAGAAGGGAAGGATGG
>LE_HBa0049M07_T7_10189 (trimmed for quality and cloning vector)
GAGAAACACCTGTCGCAGTGCAGTCCACTCACAACCCAGCCACAAATGAGATTCGTGAAGAAATGGCTCAGATGAGAACTGAGCTTGGTTTGGTACTAAA
ACATGTCACTGGGGGTGCAGAAAAGATAAATACAGTCAACTACTTGGCTAAACCACCACCTCCTAATGATGAATGCTATTATGCGGAGGACACTTATGCA
GTAAATGAGCAGACGGGGGGTTTCCGACCTAGCGCATAAATTTTTTATCTAAGATGAGTAAGTCTTCCTCTGAGTTAAGTAAGCCAGGCGAAGGGTTCGC
TTGGGGGCCAGCAATGGTCTTCGAGTGCCGACCACGTCCAGCGTATAGGCTCCGGGCGTGACAATTTTTCATTTTCCGAAAGGATAATTGCATTTTTTAG
TTACCAAAAAAGTCATTGCATTTTTCATTTTGTGAAAGGATAATTGCATTTTTCATCGCCAAAAAGGTCATTGCATATTTTATGTACCGACAAGGTCATT
GATTTTTTATTTTTTGAAAGGATAATTGCATTTTTAATTTGCCAAGAGGGTCATTGCATTTTTTATATTCTGAAAGGATAATTGCATTTTTCATTTGCCA
AGATATTCATTGCATATTTTATTAACAAAAAAGTCATT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963167
Expected error %
0.204941
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 100 E Value 5e-20 Identity 23.00% Align. Length 203bp (31.82%) Frame 1
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0049M07
Clone
Clone name
hba-49m7
LE_HBa0049M07
C08HBa0049M07
P049M07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found