Clone Read LE_HBa0156K17_SP6_102272

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0156K17_SP6_102272
Primer
SP6
ID from Seq. Facility
LE_HBa_156_K17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
421 trimmed for vector and quality, 926 raw
Sequence
>LE_HBa0156K17_SP6_102272 (raw untrimmed)
AAATTATTTTTTCCCTTTTTCTGGGGCAGCGGGTACCATTAAAAACCACACCGCTATCTTTTTCCTAGGTAACCTTACCCACGTCTCTTCTATTAAAACC
AGTCTCCTTTCAGTTCACCAATTCACAAAAGACAATAATTGCTCACTCTTGTTCACCTCTAATGATTATCAGATCCTAGACAATACTACCAAGAAGGTGA
TTTTTCAGGGCCCCTGTGAGCATGGTCTGTACGTTCTTCCTGGCACAAGTTCGTCTGCCCACCCAGTTTCAAAAAGCGTTCCTGTGGCTCCGATGGCTCT
TTTGGCTGATGGCCACAGTCTGTTGTGGCACAGTCGTCTGGGTCACCCGTCTACTCAAATAATAAATTCTTTAATGTCTCAATTAGGTTTTTCTTCCATT
CATGTAAACAATTGTGACTCTTGTTCAATTGCTAAATCTCATAAATTACCTTTTACTTTATCTGAGAAGCGTACAACTTGCACATTTTCAACTTATTCAT
TTCTGACCTATGGGGTCCTACCTGCTGTACCCTCATTTGCTGGTTTTCGTTATTTCTATTTATTTTGTGGATGACTTTACAAAATACAGCTTGGATGAAC
CCACTAAAATTTAAATCACAGGCTCACAACTACTTTAGTCAGTTTTGATAAAATGTGTCAAGACTCGATTCATACACATGATCAAACCTTAATAAAATTG
ACGAAGAAAAAGGAAACCTTTATTTACCACTATTTGCCCTTTTCTTCGTTCCTGAGACTTTCCATGCAACTCGTGTCATTTTATTCTCAAATGATGGGAT
GGCGGAGGCTGCCCTATTGCATCAGTTTTTCGTCGGGAATCCTTAAAACATACCAATCTATCGCTCGGTATGACGCATGTCCTACGACTGAACCTTATCT
CTTTTGTTAGGAGCATTCGGATACAC
>LE_HBa0156K17_SP6_102272 (trimmed for quality and cloning vector)
TTAAAAACCACACCGCTATCTTTTTCCTAGGTAACCTTACCCACGTCTCTTCTATTAAAACCAGTCTCCTTTCAGTTCACCAATTCACAAAAGACAATAA
TTGCTCACTCTTGTTCACCTCTAATGATTATCAGATCCTAGACAATACTACCAAGAAGGTGATTTTTCAGGGCCCCTGTGAGCATGGTCTGTACGTTCTT
CCTGGCACAAGTTCGTCTGCCCACCCAGTTTCAAAAAGCGTTCCTGTGGCTCCGATGGCTCTTTTGGCTGATGGCCACAGTCTGTTGTGGCACAGTCGTC
TGGGTCACCCGTCTACTCAAATAATAAATTCTTTAATGTCTCAATTAGGTTTTTCTTCCATTCATGTAAACAATTGTGACTCTTGTTCAATTGCTAAATC
TCATAAATTACCTTTTACTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948258
Expected error %
0.388781
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU10682.1| Score 87 E Value 2e-16 Identity 12.30% Align. Length 404bp (95.96%) Frame 1
putative polyprotein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_915573.1| Score 85 E Value 7e-16 Identity 11.50% Align. Length 392bp (93.11%) Frame 1
putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0156K17
Clone
Clone name
hba-156k17
LE_HBa0156K17
P156K17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found