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Clone Read LE_HBa0049P10_T7_10339

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0049P10_T7_10339
Primer
T7
ID from Seq. Facility
LE_HBa_049_P10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
720 trimmed for vector and quality, 853 raw
Genbank Accession
DU029330
Sequence
>LE_HBa0049P10_T7_10339 (raw untrimmed)
TTTTTTTGGTGAAACTCGGATTATAACGGATCCTCGAAAAAGGGTAGGTAAAAGGAAAAAGAAGGCACATAATGACCTCAGCACAGATGAACCCTCTCTC
AAAATCTGTATGAATTGTTCCAGCAGCTTGAGGAGCCTTCATCAGCCTGCGGATTTGCCAGCATTTAACCTGTATTTTAAAGAGAAAAAAGATTATGAGG
CCTTATAATCATCAACAATGGTGACTTAAATTTACTTTTTTAGGGGATGGGCTGACACTCTTTCCGTTTTGAAACATCTCAAAATGTTGGGCATCATGCC
ATTACTATAAAATTTACACAACTTTCCGCAATTGAAGTCATTAAGCATTTCAACCCTTAAACTTTCAAGTTATGCTTTTTTTTCTCAAATTAAAATTTCA
GCCATGATTTTAATATTTGCTCCACCATCACTAATATAATATACAAGTCAAATTAAGTTCTTAAATTTCATGTCCAGTCACATGACATCATATAAACTAG
AACGGGGCAATAAATTATTTATGTAGCATTAAACTCAACACCAAGTAAGAGAAGGAATGGGACAGAATGAAAGAGGAAGAATTTGAAATACCTCATCTGG
CCCTGCTGTGAAGAAATAAATAAGATTAATGGCTGCAAATCCAGTCTTAATGATCTTTGGGAGGCAACTGTAGCATGATAAATCCAGATCAGCTGGATGA
AGTGACAGAAATGATGCTTTCCATATTTATCATAGGCCTAAATTTCACAGCGAAGTAAAATTTAAATATGTTTAAAGATTTACTGATATGCTTAAACAAA
TGAAATGGTGTCAATTCCCAAATCTATAAATATAGATAACTAATTGGCCCAGA
>LE_HBa0049P10_T7_10339 (trimmed for quality and cloning vector)
GAAAAAGGGTAGGTAAAAGGAAAAAGAAGGCACATAATGACCTCAGCACAGATGAACCCTCTCTCAAAATCTGTATGAATTGTTCCAGCAGCTTGAGGAG
CCTTCATCAGCCTGCGGATTTGCCAGCATTTAACCTGTATTTTAAAGAGAAAAAAGATTATGAGGCCTTATAATCATCAACAATGGTGACTTAAATTTAC
TTTTTTAGGGGATGGGCTGACACTCTTTCCGTTTTGAAACATCTCAAAATGTTGGGCATCATGCCATTACTATAAAATTTACACAACTTTCCGCAATTGA
AGTCATTAAGCATTTCAACCCTTAAACTTTCAAGTTATGCTTTTTTTTCTCAAATTAAAATTTCAGCCATGATTTTAATATTTGCTCCACCATCACTAAT
ATAATATACAAGTCAAATTAAGTTCTTAAATTTCATGTCCAGTCACATGACATCATATAAACTAGAACGGGGCAATAAATTATTTATGTAGCATTAAACT
CAACACCAAGTAAGAGAAGGAATGGGACAGAATGAAAGAGGAAGAATTTGAAATACCTCATCTGGCCCTGCTGTGAAGAAATAAATAAGATTAATGGCTG
CAAATCCAGTCTTAATGATCTTTGGGAGGCAACTGTAGCATGATAAATCCAGATCAGCTGGATGAAGTGACAGAAATGATGCTTTCCATATTTATCATAG
GCCTAAATTTCACAGCGAAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948505
Expected error %
0.203867
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g30580.1 Score 66 E Value 2e-11 Identity 28.40% Align. Length 101bp (14.03%) Frame 1
68414.m03741 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF65513.1| Score 73 E Value 8e-12 Identity 31.40% Align. Length 101bp (14.03%) Frame 1
GTP-binding protein [Capsicum annuum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0049P10
Clone
Clone name
hba-49p10
LE_HBa0049P10
P049P10
Clone type
BAC
Contamination
none
Estimated length
63,742
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found