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Clone Read LE_HBa0162G15_SP6_103612

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162G15_SP6_103612
Primer
SP6
ID from Seq. Facility
LE_HBa_162_G15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
438 trimmed for vector and quality, 908 raw
Genbank Accession
DU093818
Sequence
>LE_HBa0162G15_SP6_103612 (raw untrimmed)
TTCTGTTAAGTCCGCACCCATTTTCTATAGAACCCCTTTTTCTCCAACATCTTCTTAAGTGCAAAGCCCTTATAGTAAATTTGTGACGAGGATCCAAAAA
ATGGTTTGCCCTCCATCTTATTCATTTTTTCAGCATCACCCTAATATTTGTCAAATTTCTCCTTCATATTTTCTGCCATTTTAGCCAAAACTTGATCTTC
ATTTGATATCAATTGATTCAAATAAACACCAACTTGACAAATTTCAAGAAAATAAAGATTTGATGTAACATATCGTGAACCACATATCTTCAAAGTAAGA
TTAAAAAACATTTCAAGAAATTTTGTAGTTCTCTTTACGCCCTCCCAATCACTACTCAAAAGTGTACCTATAGAATTTTTATCAACAAACTTAAGATATA
GTGCCAAGACAATATCACGATCGGTGCACTCTAAAATTACCCCTTCATATTCAATAACCCTGCTCAACATCATGTAGGGTGGAATTCTACCTTGTAGGAA
TATCCAAGCTTAAAAGACTTTTTAGCAAGATTTTCATCCTCACAACATTCTTGAAATTTTTTCCATCTAGCAAGGAGATTGCCCGATGTATCTTCACTGC
TTGTCTAACTCGGTTCAATAGACACATTTGTTTTCATTTGAACCATCATGAAACATAAGTATTTAATATTTTGAATACTTACACCTTTATTTCAATGGGG
GACTTCCTCTCCTTTTTAGTTTGGTTCCCCCATTTTAGTTTAATTTGCTTTATCACATTTTTAATTTTTTGGCCCATATTATTTTTTAAAAAAAGAAAAT
TTTCCGACCTGTGTTTCAAGTTGAAAAAAATTTCCGTTGTATTGGTTCTCTCCTTGTTAATTGACAAAACTCTACTTTTCATATATTATTAACTAATTTT
TTCTACAA
>LE_HBa0162G15_SP6_103612 (trimmed for quality and cloning vector)
CCCCTTTTTCTCCAACATCTTCTTAAGTGCAAAGCCCTTATAGTAAATTTGTGACGAGGATCCAAAAAATGGTTTGCCCTCCATCTTATTCATTTTTTCA
GCATCACCCTAATATTTGTCAAATTTCTCCTTCATATTTTCTGCCATTTTAGCCAAAACTTGATCTTCATTTGATATCAATTGATTCAAATAAACACCAA
CTTGACAAATTTCAAGAAAATAAAGATTTGATGTAACATATCGTGAACCACATATCTTCAAAGTAAGATTAAAAAACATTTCAAGAAATTTTGTAGTTCT
CTTTACGCCCTCCCAATCACTACTCAAAAGTGTACCTATAGAATTTTTATCAACAAACTTAAGATATAGTGCCAAGACAATATCACGATCGGTGCACTCT
AAAATTACCCCTTCATATTCAATAACCCTGCTCAACAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.92122
Expected error %
0.722439
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV32822.1| Score 68 E Value 9e-11 Identity 11.40% Align. Length 332bp (75.80%) Frame 2
transposase [Zea mays]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162G15
Clone
Clone name
hba-162g15
LE_HBa0162G15
P162G15
Clone type
BAC
Contamination
none
Estimated length
115,868
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found