Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0162H24_SP6_103678

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162H24_SP6_103678
Primer
SP6
ID from Seq. Facility
LE_HBa_162_H24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
48 trimmed for vector and quality, 975 raw
Sequence
>LE_HBa0162H24_SP6_103678 (raw untrimmed)
GAACTCCCCTACCTTTTGCTTTTCGAGATGTGAATACTAACGATTACTACTGCATCTGCACGGGTGGTTAGGCCAAGTTCCCCTCCCCACAGCTGAAATA
TTTAACAAGTTGCTGAATCTACGTTCCCCTTTTCTGGAGCGGGATTTAGGCATTGTGTCTGACCAGNCTTTGTGTAATCTTTGTTNTGAACGTATAAACA
GGTAGCATGTTCCTTAAAAGTGGAGAAAGTCTACCTCATGATAAGCATCGAAGACAGAAAGGCTGCTTTAATTTACCTCGAGAAAGAAAAATGGTGATAC
AAGGCTGTTCGCCGTTCTCCTTCCCCCCTGACAGGCTGTAGACCTCTGCAGAGGGAAAGGAAATCGAGTCAAGTGGACAAACTTGGTATGTGGACTAATT
GGTGGGAGCCCCCCACCTGAAAAACGTTACCAATGGAAAAGATATTATCTGGAGCCCCCTACCAAAACAGAGGTCCATTTATTTTCCATTTAGACCAACG
GTTTTTGTAGAAGCGCGAATGGTCTCCGTTAATTTTTTTTTTTTTCCCCCCCCCCCCCGACCTGGGAAAAAAAAGCTCACCCAAAAAAAAAAGAGGGGGG
GGGCGCGAAAAAAAGAACGCGACCACCNCCGCGAGGGGAGCGGAGCGAGGCGAGGCACGCGCCGGCAGCCAGCCGCCGCGCACCCCGACCCCCCATGGCG
CCCCCCCGACCACTCCAGCCAACCACTCCACCACCCCTTCCATCCTACACCTCCTCTTTTGCTCGCTGCATCCCATCACGCCCCCCGCCCCCGCTCCTCC
CCCCTCCCCTTCTGCCCCCATCAATCCCTGAACCCTTCCACCGCTGGACCAGGCAACAATCACCGACATCTGTCTCTTCAGATAACAATACAACTCCAAT
TGATACACTAGAATCAGCGACATCAACATCCAACACCTCCCACGTGATAAGCCTAGCCCCACATTAGCACACATC
>LE_HBa0162H24_SP6_103678 (trimmed for quality and cloning vector)
TTGTGTCTGACCAGNCTTTGTGTAATCTTTGTTNTGAACGTATAAACA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.906454
Expected error %
9.01259
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162H24
Clone
Clone name
hba-162h24
LE_HBa0162H24
P162H24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found