Clone Read LE_HBa0172A19_SP6_104100

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0172A19_SP6_104100
Primer
SP6
ID from Seq. Facility
LE_HBa_172_A19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
471 trimmed for vector and quality, 961 raw
Genbank Accession
DU092688
Sequence
>LE_HBa0172A19_SP6_104100 (raw untrimmed)
CGGTGGGCTTTTTGTCCATGCCTTCCATTCTCTCAATGTCTTACTCTTTTGGGTTAAAGTAGTTAAGGGACTTGCACCCTTTACAGGGTCCTCCAAAAAT
TTCCTGTGATAACCCGATCCCTTTAAGAAACTTCTAATGTCGGTTGGAGTCAATTGTCTAGGACAATTTTTCACCGCCTCTATTTTCCTTAGATCAACCT
TAACTTCCTCACTAAAGATAATATGACCAAGAAACGCGAATGACCTCAACCAAAACACACATTTGCTATACCTGGAAAGTAATTGATTCTCCTTAATCAC
TTCCATGTGATCACCCTCATTTTCCGAATATACAAATATGTCATCAATGAAGAAAATGAAAAACGAATCTTGGTAACTTCGAAACTCCTTATTCATGAGA
TCCATAAATGTTGTCGGCGCATTACTGAGAAAAAAGTACATTACTAAGAACTCATAGCGGCCATATCTTCTCCAAAATGCCATTATTGGTATATCCTCAC
CTCTCACTCTAAGTGGTGATACCCCGATCTCAAGTCCATCTTAGAAAATTTCCTTGCCCGTTGTATTTGGTCCAATGCATCATTTGCCTAATAAATCTTT
GAGTTGAGCCTTTAACTCTTGTCAATATCGCAGGATTACTTTCTTTAAGGATGAATTAAAATGGGATTTGTTTCTGGGTAACAAGTTCATACAAAATTCA
ATTTTTTTTTTTCCGCATCCATCCAAATAATATTAACTACAACATACCTCCCTTAATTCCTTACCTTCGGGATCCTATCTTTGTGACGAATCTCCCCCAC
CTAATCCTTGATCTTCTTACTTTGTTGTAATTCTCTCCCTTTCACACTCATCTTAAGTCCTTTTCGATACATAACGACTCATCCTCCTTGTATTCAATTC
ATTTCCCTCTCTCCTCTTCTTACACCGGTTCCTCTTTGATATCGTATACTTCTTTCCTCTC
>LE_HBa0172A19_SP6_104100 (trimmed for quality and cloning vector)
CTTTTGGGTTAAAGTAGTTAAGGGACTTGCACCCTTTACAGGGTCCTCCAAAAATTTCCTGTGATAACCCGATCCCTTTAAGAAACTTCTAATGTCGGTT
GGAGTCAATTGTCTAGGACAATTTTTCACCGCCTCTATTTTCCTTAGATCAACCTTAACTTCCTCACTAAAGATAATATGACCAAGAAACGCGAATGACC
TCAACCAAAACACACATTTGCTATACCTGGAAAGTAATTGATTCTCCTTAATCACTTCCATGTGATCACCCTCATTTTCCGAATATACAAATATGTCATC
AATGAAGAAAATGAAAAACGAATCTTGGTAACTTCGAAACTCCTTATTCATGAGATCCATAAATGTTGTCGGCGCATTACTGAGAAAAAAGTACATTACT
AAGAACTCATAGCGGCCATATCTTCTCCAAAATGCCATTATTGGTATATCCTCACCTCTCACTCTAAGTGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958227
Expected error %
0.856809
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 165 E Value 4e-40 Identity 18.40% Align. Length 467bp (99.15%) Frame 2
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 165 E Value 4e-40 Identity 18.40% Align. Length 467bp (99.15%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0172A19
Clone
Clone name
hba-172a19
LE_HBa0172A19
C08HBa0172A19
P172A19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found