Clone Read LE_HBa0189I10_T7_106771

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0189I10_T7_106771
Primer
T7
ID from Seq. Facility
LE_HBa_189_I10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1676 raw
Sequence
>LE_HBa0189I10_T7_106771 (raw untrimmed)
GACGAGTGCTAGCAGCAGAGTGCGCTGTCTGCGCGCGGANGGCGTGGGATATCGCCTCGCTTNATGNAAGGCTCTCGGATCGCCGTAGGTCAACGAGGAC
CATTCGGACNAGACGGCTCTCTTANATACGGACCAGGTGGTNACTCTAGACTNCNAGTAGGAGGCACTCCCTCGCATCTTGTGCTCTCACGAGNTGCACG
TAGGNCATGCCGGTCTACGANTGCTGTGTAGTATATGGATCTCTAAGTACGCGAAAGCTCGCATTTCGCTCAGAGTTGANCACGCTGAGTACTATGCTGC
ATATGCATGTATCTGCGAGAGGCTTACTTANTGATCGTAGAGATCCGTATGTAGCTCTCTTTCAGTAGCATGGTAGCGCGGCTGTCGTTCGACGACTTAG
GTACATCAGTGATGCACAGTTNCAATCATCCTCTAGTCCCAGCTNCTGTATGCGAGGGCATATCGCACATGNACAGACGACATGACTANCTATCAGTGAC
CATGTCGTCAGCACNATACGCTANTGGTGCGTACNGTANCTGTGCACGTNCTCAACCNGTATAGAGTGTCCTTGTCTGATTGGAGCNTCATCGTACCGTG
TTNCTCTGNTGCTGCGTTTGAGCTCTCCGACTCAGATCTCATAACGCGACTGCCGTATACTCGTGCCGCATACTTGTGCCTACGCTTTATGTCATGCACA
TACAGTGTTGCTCTTAACACTATAGGCGGTCATGTGTATGTGTTNGTTGTACTGATAATCTAACGTCTGCTGTAACACAACCTCGCTCTGCTCTCTGTGT
GCACGTGCTTCTCGTAGTTACGTGTACGGCATCANTGTCATGTATCTAGTTCAATGATTGTGATGATTACGGACTTAGTGTGTTCGTTGTGACTTCTATG
GTGGCATTGAGTCTTGTGCTGTGCANTGACGTCTCTGATTATCTGTATTGTGTGTCTGTATATTCTGCTGTTGTAATCTATTACTCTCACTGGACAGATA
TCTCGTCGCCTTGCATCGTCTCGTAGTCGCCGTCGTTCGTACTGACTAGCTANAGCGCATGATGTGATAGTCAGAGGAATAGCTATGTACGATGCATTGA
GATGGATCTACTTGTGAGATATATTATACGATTGGTTGTGTATACGAGGAATGACTGAAAAGAGACANGCGAGGATGTACATGGCATGTACATGATAAGG
TGGCAAGTATGACACGAGTCTAAGCGCGACGCATGGCTGTCNTATCAATGTACGATGCTAGTGTGACTCACGTTTAGGTGCGTGTTCGTAGTGGTGTTAT
ATGTCGCGACTTTGGNATGAGCTTANGTGCGTGCTCGAGCTTANCGGATGCGCCTGCAGTTGACCACTGCTGTATTGTGCGAGCGTGTGAACGTAAAGAC
ATCCTTTAGTACAGTGATGCGATGACTGTGTGTGATCAGATGACGTGCGCGGTGTCGCATGNCTGATGTCGTACGTATAGTGGGTATCTGTGCGGTCTTC
GCTGCTCNTGCGTGCGGGATACCTATTCAGGTGGTGACTCACGCGTTGCGCTACTACTGCTGTGATGATACGCGCCGACCACCTCATCGTGGCTAAGTGA
TNATATACAGTAGAACGATACAATTGTAGCATATACANGNGTCAATGATGGGANGTGATGACTAATGTATTGATGC
>LE_HBa0189I10_T7_106771 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0189I10
Clone
Clone name
hba-189i10
LE_HBa0189I10
P189I10
Clone type
BAC
Contamination
none
Estimated length
116,245
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found