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Clone Read LE_HBa0189N04_T7_106999

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0189N04_T7_106999
Primer
T7
ID from Seq. Facility
LE_HBa_189_N04-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 824 raw
Sequence
>LE_HBa0189N04_T7_106999 (raw untrimmed)
GGGTACCCGGGGGATCCCCTAGAGTCGACCTGCAGGCATGCAAGCTTGAGTATTCTAGATTGTCACCTTTGTATCTTGGCGTAACCTTGGTCATAACTGT
TTCGTGTGCGAAATTGTTATCCGCTCACAACTCCACACAACATACGAGCCGGAGGCACAAAGTGTAAAGCCTGGGGTGCCTAATGAATGAGCTAACTCAC
ATTAATTGCTTTGCGCTCACTGCCCTCTTTCCTGTCAGGAAACCAGTCATGCCAACTGCATTAATGAATCGGCCAACGCGAACCCCTTGCGCTCTCCCTG
ACCGGAAAACGAATCAATCGTTATATCGCGATTTTTTTATAATCAACAACGCTTCCGAAATTTAAATTTTAAGTCAATTTGTAGGCACACCATTTATAAA
AGTTATATAGATATCTCTATAACTATATTATCCGTTATCTCTCCCTTCCTACCCAATTACGTATTAATACATTAATCGTTGCTCAGAAACATTAACCTTA
TTGATCTTTCTTATGAAATGTAGCTGACCCATACCTCAACTACCATCACTGCATTACTTTTAATTTCGTATCCAATAAAGATCTCGACGTGCCTATCAAG
TTCTGTCTCTTCGGTCTAGTTTATAACTTTTTCCGTATGTTTTATCACGAGCCCTCTTGTCTTTTTCTTCCACGTCATAATAAATAACATGACCTCATAT
AGATTTCTTTGCTCATGAATCACTTTAAACACATCTCTTCTCTTCTATATATCTATTATCCTTTGACTATATTTCTCTCTTCTATAGCAGTGACAAAACG
TGATTGTACAAAAACACATCAATA
>LE_HBa0189N04_T7_106999 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Probable foreign DNA contamination
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, no insert found (only flanking vectors)
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0189N04
Clone
Clone name
hba-189n4
LE_HBa0189N04
C03HBa0189N04
P189N04
Clone type
BAC
Contamination
none
Estimated length
141,158
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found