Clone Read LE_HBa0190A04_SP6_107142

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190A04_SP6_107142
Primer
SP6
ID from Seq. Facility
LE_HBa_190_A04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1293 raw
Sequence
>LE_HBa0190A04_SP6_107142 (raw untrimmed)
ATTACCTTAGCCCCAGGGTCCCCTCCCATCAGTAACCCCGTGGTGTTGCACTGCACGATTTAACATCATTCTGTTGTTCATTTGTGTCGTATATNTTACT
ACGAGATGCCCCCCTGTATAGGGGGGGCTNNGCNTNNCNGACGGGCATGGCACANCGCANAGGCCCTCCCCCCTTTTGAGAGCGGTGCCCTCTATCTTNT
TAGCGCTCCGTAATCAACTCTGCGTCACTGTAGTACTTCACAATTTATATATTGACGGCGACGTCTATGGCTTCTAAGTGAATCTCCGACTACACACAAC
TCGCACCTACAACCCACTCCACTCTACCCAATAGACGCGTCGTAACGATCCGTTAGTACTCGGGTCTGACAGTCTTCTCAAGACCAGACACACATTAATA
CAAAGATACGCTGAAGTGGAATAAATATTCTAGACAAGCGATTAATATCTGAATTTCTACTAAGATGACTCTCCTACGTATTGCTTTGNACGAGCNATAC
AAATCTATTAGTCTCAATCGGCACGATCTACACTGTAGCTAGCAAGCACACTCTTACGTTTAGCTTCGCAACGTATTTGTACGTTAACAGCAACGAGTGG
CGTACTGTACATTTTAAATTATTCGTGCTAAGATAATCTTTGACTGCCCTAGATGGCGCGGTACTATATATTGTGTGGGCATGTGTGTAGTTTCGTCGTG
ACATAATGTTCCTCTTACTCAGTACAATTAAGCATATTTGATCCTTTACCCATCAGATCACAGAGTCTGACGCGCAATCTCACCTACATTCACCTAATCA
AACACAGCCAACTCATCATACTGAACTTCACCCAACTTCCTTATTCTTACTTTATTTGTCTACTCCTCTACCCATCTGTTATACATCATTTATTCAATTT
CGATCCTCATAATCGTCCAACCATCATTACTTACTCTATTTATATCAATGATCTTCGCTATTATAGCTCCGTCATATATATATGCCTCGGATCTCCGCTA
CTATCCACTATCATCACACGCTCTTTCTGCGCTTTTTTACACACACATCTGCTCTCACACTGCTGCCTGCATCACCGTTGTGACTACGGCTTATACCATC
TACNACTTCATTACTCTCTACTTGGCGAGCCCGCCCGCCTCATCTTTCCCTTCACTTTCTATGCTGACCGTCTACTCTGTACACACTCATATTGTATTTG
TACTGACATGCGCGCCGCCACACCGCCTCTACACACCTNCGCTTACTCTCCTCCGTACTAATTGATCATCCTGTTATACTTGCTTGCTCTACA
>LE_HBa0190A04_SP6_107142 (trimmed for quality and cloning vector)
TCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.1858
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190A04
Clone
Clone name
hba-190a4
LE_HBa0190A04
P190A04
Clone type
BAC
Contamination
none
Estimated length
98,483
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found