Clone Read LE_HBa0190M12_T7_107735

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190M12_T7_107735
Primer
T7
ID from Seq. Facility
LE_HBa_190_M12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2091 raw
Sequence
>LE_HBa0190M12_T7_107735 (raw untrimmed)
TCAATAAATAGACTCATATAATGATCTGATGGTATGAATGTTATAGGAGCGAGTATAGATCCGATGTCTAGTAATATGNCGTCGCTCCATAGACTCGATA
GCACANTGTCNCAACGNCNGTNTAGTTTCATAGTGGCGCTTNTCCACCTGTGTGCCCCTCACTCTCATATGTATTGAGTGGTTGNCTCTNTCNTNTGTCN
CTGCGTGAGATATGATCGAGCTTGTATCTCTCCGATNACAGAACACATACACTTGTCTTTNGNGCATAGAAGATACTATNGCAGTATCACTGTTCNGCTA
TGGNGTGCTGCGANTCACANACTATGCGTTGATTCGTGGCGCACCTGTCACAGCACTGTCCTAACGNGTCTACTCTATGAGTGTATATCAGNTCTNTNAT
TGCGTACATCGCGGANTGGCTNCGCCAACATGTTGAAGACTTGGTAGCCTATTGAGTCNAGGCGCGCNATCGCATCTCTCGTTATCATCNACTATCACGT
ACACTTATGACGTGTGCGCGCTGTGTCTACTCTCTACATNAGTTGCTCATGTANGCATAGTAATCCCNATACNAGTATACTGTNCTATCGCGCGTNGCAC
GTCAGCGTGCTGCACTCACGNCTGTNACCGTCTNCTGCTGCTNTATCTGTTCTTACCACCNTATCTATCNCTTTNTATANANACAGCGANTGCTGACTAN
CTCACCTACGCTATAGTGCGAANCTATGCTCTCNTNGNCACCNGACTTGCGNGATANANGAGCTGCGCCGTGGNTGCGGCTAGCTCAGCCAAGCANACGA
NANTATGTTGTTATGACGCACANCTCCTCTGCTGCTCCTCACGCANCACNACTGCANANCGCACTAAGAGATGACTGAATTACNATNCNCCCTGGGTCAC
TNGACGTGGCGCTCGTNANACAACAACTACGTCTGCATCGCTTGTTTNTCNGNATACTACTCCACTCGTATCTCGCGAGAGANNATNGCANCNTCTTTCT
CTACCGANACCACACTCAGCACACACACTCCCTACNGTGNGCACACTNCTTCATCTGTTGTACANCTGTCATGATATATACTACTTGTCTTACNCTCCNC
TCATCGTANTNACTNCCATGCGTATGATCGCGCACTCATATGCTCCTGCATATTGGNTCATACGATCGATGTGAACTGCATATCTACACNATACATACTA
TCCCTGAACAGACGATACTGTTACCTGTACTATACNATGCTATCTNCTGTACACTACTANACTGANTCTGCANGCGACTGACTCTGACGCTACACACTCA
CNCTCGTTGTGATACATACCCTATCATGATACTGCCCATGTTTACGCGCNATGCGACACTGNCTNGNTNTACATATCTTAGCNCTATANCCTNACTCGTG
NACTGTNTGTNATCNTGTACACNGACTGTGTGCATCTNGCACGTAGCTGNCTACACGCACACNCACGCACGTCGTTTGATCTCATCTACATATAACACTT
NTACGACNTCTTCATCTTGCTTTNATTCACAACTGTGTGACCATGCATGNCTGCTTTNCANTNTACTTGACTCANTCATGTACATTCNCTACTGATTTGA
CCTGTATNCTATACCTGTGTACTCGTCGCTTCTNTNTTTNACACNTGTGCAANCNGTTTNGTGACTGTCCNGCATCTCTGTGCCGCCAGCGCGTCTGACA
GNTACTNGCGATACGTNTGCTANTCNGCATGTACGCATGCTGCNACTATCATAGCGAGCATAGTCGTTTAANAAANTNGAGCAGCANGATATAGCTTGCA
CACGAGCTTGNGCTNCGTGCGTTACTTGTANCACACATAGATAGTGATATACACTCGTACCCCNACACACNTNATTAGATCTCGACTCCNGCGCTACTTG
ATNCNNTNAGTNGCAGCGNAGGCNTNACAGCNTCTGCTNCATACNCACNATTCTTTNCTGCATATCAGCTACATCTCCTAACNNANANCGCTGCTANGCT
NCNCTGCTANCACTGANANCTTACAGATGTNGCNCTTCTTATGTAGATGTACTACTATCTGTCTGACACNCTGCTTATTTGCTTNGCATTN
>LE_HBa0190M12_T7_107735 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.89662
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190M12
Clone
Clone name
hba-190m12
LE_HBa0190M12
P190M12
Clone type
BAC
Contamination
none
Estimated length
90,790
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found