Clone Read LE_HBa0193B10_T7_108736

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0193B10_T7_108736
Primer
T7
ID from Seq. Facility
LE_HBa_193_B10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
657 trimmed for vector and quality, 893 raw
Genbank Accession
DU094132
Sequence
>LE_HBa0193B10_T7_108736 (raw untrimmed)
AGGGGGGGTGTTACCGTGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTTACGCCATTGAAAAATTCCTTTTAATTGTTTTTCTCTGCTAGCT
TTCTGGGAGGCCTGCTCTTGCCTAGATAGATCCTGACGTTGACGCTCGCACAGCCTTACGAATTTTCGGTAATGCCTATCAGGCATTGCCATTATCTCCT
GCTGCTGTTGGTCAATCTCATCCCTCATTCGTGCCTGTATACCAGCAAGTCGGAGTTTCTTTTCTTCTATTTGCAATCTTAGAACAAGATCTGGTCTAAT
CCTTTTCCTCTCTAAATTAATAGCTAGTATATCACCAATCTTCTTTATACTTTCCTCCCTTTTTCTCTTGTGAAATTCTGAGCCTTCCTCCATTAGAAGA
TCCTTGATATCATAACCCAATGTTAAATTATTGTTGTTGTTCATCATCATGGATGGTCCAAAACCATCATGCTTTCCAGCGAAGAAAGGAAAATCGAATA
ATGGTCCAAGATACTTTCGAGCTGGGCCCGTATCTTTTTGTTGAGTAGCACTAGATTGCATACCTTTTTTCACCTGAGTAGTATCAGAACCAGTAACTTG
TGATGCAACAGCTTTACCCCTATCTGGTGCAATATCACCTCTGCCAGTAGAGTTCTTAATAGCATGATCAGCATCCTGGTCAGATTTACTAGTATGTCCC
ATGATTCCCTGCCCCTCTTTTCAGGAAGAACCACTGATGCATTCTCCTTGTCTCAGTTGTGCTACCTGCTCATGTGCTTTTACCGTTGCGCATCTTTCTC
TCTCCTCTGTGCTCTCTTCTTTGAAACAATTCGTCCATAAATGGGACTCCTACCTGGGACCCTTCCCTCTTGTCTCTAGGGTTCTTGTATTTT
>LE_HBa0193B10_T7_108736 (trimmed for quality and cloning vector)
AGCTTCTTACGCCATTGAAAAATTCCTTTTAATTGTTTTTCTCTGCTAGCTTTCTGGGAGGCCTGCTCTTGCCTAGATAGATCCTGACGTTGACGCTCGC
ACAGCCTTACGAATTTTCGGTAATGCCTATCAGGCATTGCCATTATCTCCTGCTGCTGTTGGTCAATCTCATCCCTCATTCGTGCCTGTATACCAGCAAG
TCGGAGTTTCTTTTCTTCTATTTGCAATCTTAGAACAAGATCTGGTCTAATCCTTTTCCTCTCTAAATTAATAGCTAGTATATCACCAATCTTCTTTATA
CTTTCCTCCCTTTTTCTCTTGTGAAATTCTGAGCCTTCCTCCATTAGAAGATCCTTGATATCATAACCCAATGTTAAATTATTGTTGTTGTTCATCATCA
TGGATGGTCCAAAACCATCATGCTTTCCAGCGAAGAAAGGAAAATCGAATAATGGTCCAAGATACTTTCGAGCTGGGCCCGTATCTTTTTGTTGAGTAGC
ACTAGATTGCATACCTTTTTTCACCTGAGTAGTATCAGAACCAGTAACTTGTGATGCAACAGCTTTACCCCTATCTGGTGCAATATCACCTCTGCCAGTA
GAGTTCTTAATAGCATGATCAGCATCCTGGTCAGATTTACTAGTATGTCCCATGATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963027
Expected error %
1.03078
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g46020.1 Score 240 E Value 4e-64 Identity 20.90% Align. Length 635bp (96.65%) Frame 1
68415.m05724 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g46020.2 Score 240 E Value 4e-64 Identity 20.90% Align. Length 635bp (96.65%) Frame 1
68415.m05725 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC62901.1| Score 240 E Value 2e-62 Identity 20.90% Align. Length 635bp (96.65%) Frame 1
hypothetical protein [Arabidopsis thaliana] gb|AAM14971.1| hypothetical protein [Arabidopsis thaliana] pir||T02446 hypothetical protein At2g46010 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_182126.2| Score 240 E Value 2e-62 Identity 20.90% Align. Length 635bp (96.65%) Frame 1
transcription regulatory protein SNF2, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0193B10
Clone
Clone name
hba-193b10
LE_HBa0193B10
P193B10
Clone type
BAC
Contamination
none
Estimated length
124,134
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found