Clone Read LE_HBa0193E20_SP6_108899

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0193E20_SP6_108899
Primer
SP6
ID from Seq. Facility
LE_HBa_193_E20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 886 raw
Sequence
>LE_HBa0193E20_SP6_108899 (raw untrimmed)
TACGTTGAGACTGGACACATCCTCTTCTTTAAAGGAGATGGGAGGCATGATGCTTTCAATGCTTGAAAGCGGNCGGGCACGTTATTTTATTTCCTTGCCT
CTCTGTAGCAGGTTTTAGTTATTTCTTTTTAACTCTAGGTTTATTCTCCAGGTCAAATCTTAGGACTTGGAGAGCATGTAGGCAAATGCCAAAATCAGTT
CAGAAATACACATGTCATAGGATGAGATACTTGTTCTCTCTCACTGCATACAGTAGACTAATTTACGTTGTTTTCGGCCTACATTTTATTCCTCTCAGAT
GATTATAACTATACGTAATTATCTGTACGTTTTAGGCTAATTCAGTGGAGAAGGCAGTTACACAAATCATGGACGCACACCACGGCTCAGCTAGCAGGAT
CCCACCTCCCTCGGAATGACTCGAGTATGCACATTTTTTGATCCACGACCCCCACTCATCTGTTCAATAACTTACTAATAGCAGCATCTCGCGAAGTATT
TAGAGATAATGCTGTGCACCTCAACTAGTTATTCATCTCTATACCCCAGCTCTCCCACCACTTTTTCTTCCTCTCTCACTTTTCTATCCTAGCTCAACAT
CTCTCCCCTACATAAATGACACATCAACATACATCTGAATTCGAAGTGATTCGATCAACACTATCC
TTATTCTTTCTCGTCTTCTACCTTCATTAGCCTA
TCTGCATCGTCTTGNTTTGACCTACACAGTCTTGAACATCTATCTTGGCCTGTCTCCGCACTAGTCTAATACACTTGTTGGGCTAACCGCTCCCAGCTGC
TCTATCCGCCAATTAGCACATAATATTATATATCTATACAAACATAAAATCTATACCATATTAATTAATCACTTTTCCATATTAAT
>LE_HBa0193E20_SP6_108899 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.24113
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0193E20
Clone
Clone name
hba-193e20
LE_HBa0193E20
P193E20
Clone type
BAC
Contamination
none
Estimated length
101,799
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found