Clone Read LE_HBa0197E10_SP6_110410

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0197E10_SP6_110410
Primer
SP6
ID from Seq. Facility
LE_HBa_197_E10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 1136 raw
Sequence
>LE_HBa0197E10_SP6_110410 (raw untrimmed)
CATCTTTTGTCGTTTCATAAGACTGGGCGGAGGTTACGACATCCGCCATTCAACTGTAAATCTCTTTTTTAACTTCTTTTGTCTTTTCACTGGTGTTTCC
CTCTTATGGAAGAGAGTCATCGGAGTTCTAATACCTCCATAGAATCTCATCTTCGCT
TTTAATGTAATCTATTTCTTCACATACATTTTTAGAATGCCTT
ATCTAACTTAGACATGACAACTCAATCGATTTCGAAACGAATCTAGTATTTTGTTGATTTTTTGTTCATTCATCTTTTCCACTCAACGTTACATCATTCA
GTTACTTAGCGGATATTTCATAGTTTCAATCTATGAACTATTTTATGGTGATATTTTACTGGACTACGAATTACCACATAGAGTATTTTGCACTACAATT
CTAACCATTTTATACATCTTACATTATGATACATCACCTGATATTACATAATAATTTGTTGAATCGTCATGAATCATCATACTATAAAACATTGACATAT
ATCTTCGTAGTCCTTTAACTATTGAGATACACCTTATGTCTAAGTGTCACTATTTTATGGCACCACACCATAGCTACATCATGATGTCACATAACTACTA
TTTGGCTTAGTCATATCTATACATAGATAACAAGCCCAGAAGTATGCTTTTCAATAATAATTTCATTCACGTATATACCACAAACGACATCAACCAGCGT
TACTACTACCTCAATACAATATCATACACTAAACTCATAAACTTATAAAATTCATTGCACTCCTTCGCTATCTATCTGCACTTTGTTAAATGGTCTGAAT
CCTCTCTCCACTCCCTTTTCTTGACTTCTAACTTATAATAGGGACATGTGCACGTGGTTACTCGTCTTACATGATTCGGGACTGAGATTACGTGATTTTC
TCTAGTACATGTACCTGTATTCATAATCTGCTTTCTGTACCGTTCTGAACCTTGTCATAGTCCATAATCATCATACTCTCACCTCATGTTTCATTTCTCC
TTATCTAATTTTATTTAACTTACTTTCGTCTCTGTTACTTGCAAACGGATAACGCACTCCTCTTCCTTTCACAACTCCTAATGCATCTTGTATAACAATT
ACTCGTGTGTAGATGCGCTGATTTACCTATCTTGTT
>LE_HBa0197E10_SP6_110410 (trimmed for quality and cloning vector)
TTTA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.582048
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0197E10
Clone
Clone name
hba-197e10
LE_HBa0197E10
P197E10
Clone type
BAC
Contamination
none
Estimated length
110,144
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found