Clone Read LE_HBa0197K14_SP6_110706

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0197K14_SP6_110706
Primer
SP6
ID from Seq. Facility
LE_HBa_197_K14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
555 trimmed for vector and quality, 827 raw
Genbank Accession
DU096127
Sequence
>LE_HBa0197K14_SP6_110706 (raw untrimmed)
TTTTTCTTTTACTGGAGTTGGGTTTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGACTATTTCACTTGTGGTGGACCTGATGGTAA
ACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGAT
CTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTG
CAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCT
GGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACA
GGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTA
ATTCGAAAAACAGCAGAGAACAAAAGGAACTAATGTCAATATCTCCTGAATTTATATCATCAATCAGAATTTGAATGTGGCTTTCATGTCCCAACTATGA
AATTGTAAATTTCCTTCTATGGAACAACTATGGTATAAAGGGAAATTTACTAATGTTTCTTTATATTGATTAAAATCCCTATGCTTTTCATCTTACACAC
ATTTATTTGTGTCCACTTGTTTACTCC
>LE_HBa0197K14_SP6_110706 (trimmed for quality and cloning vector)
ACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGACTATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTT
CACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTG
GCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAG
AAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAG
TTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCC
AAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964142
Expected error %
0.196531
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g01370.1 Score 93 E Value 8e-20 Identity 15.60% Align. Length 359bp (64.68%) Frame 2
68416.m00059 expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ89616.1| Score 93 E Value 3e-18 Identity 15.60% Align. Length 359bp (64.68%) Frame 2
At3g01370 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] ref|NP_186786.2| expressed protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF24608.1| Score 93 E Value 3e-18 Identity 15.60% Align. Length 359bp (64.68%) Frame 2
unknown protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0197K14
Clone
Clone name
hba-197k14
LE_HBa0197K14
P197K14
Clone type
BAC
Contamination
none
Estimated length
97,868
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found