Clone Read LE_HBa0198J21_T7_111441

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0198J21_T7_111441
Primer
T7
ID from Seq. Facility
LE_HBa_198_J21-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1674 raw
Sequence
>LE_HBa0198J21_T7_111441 (raw untrimmed)
GCCGATCTGTATCTGTATAATNGCTCGCTCATACGATCTTAGCGCGGCGTGANTCATGCCTCTCTATCCATCTCGCGAGGCAGGAGTATCGATGATCTAT
CAGACTATACATGGAGAGTGAGGGCTANGTGTATCACGTCGTCAGCGCACAGACCAGANAGTAGAGCATANGAGAGAGCTCAGCACGCACGTGAGGGACA
CGGACCTGATACCTAGTTGATATTNCAGCTCAGACACTCAGTGAGTNTAGAGACGATCTCTGATAGAGTTCGCGAGTGTGTCTCGATCAGTGATCAATGC
GACCATNTAGCTATAATTCTCGNCACACATGCAGATGATCTAANCAGACACGACTGCATNCANCTTNCTNAGTTGANGTCGTGAGAGANTTGCTGACCGT
GNCATNCGCGTGCNCTCTGACGCTGCGTACTGNGNAGCTGTAGCTGTGACTGCACNTGGCTCTCTCACACNGCCTCTCGANGACGTGCAACTATGCCANT
NATCCGCATATACTGCGAGAGCGGCGCGCGGNGAGCTNCACATGCGNCANACNCNGCACCTAACAGCTATGCGCGANCGTATCTATAACAGCGCTATCTT
CACATCGCACGTACCCTNGANTCACAGATCCCCTATCACTGATTGACAGACTATATNACTACTNCNCTCNACACGACACACAGTAGCATANGATATCTCA
CTAACTNCTAAGTGAGNCTNATCGGATAGTACGTGAAGGCANATNGCAGNTAGNGTGANTGANNGNTGAGTACNGANTGACNGTACTGAGNGNNNGCAAG
NGTGTNGTGTCTACTTTCCTANATGCGTACGCGTGCACTGCGCCTCTCTACACTNCTNACTCGATGATACNANCGANTAATCAGCAACTAACAANANTAA
AGCAAAGACACAGAGGATAGGATTCANATTCAGTNACTACTCTCTACAACTGACANNTATGTNGNNATCGTTAATGATAACTATACGACACTGACGCTNG
NTNGTNTAGTGCGGNGATCGATGCGCGATAGTANCTGATCGCGCTATGTGCTGTANTGCAGTATAGATACGAAATCATCATCTATGCTCATCGCTATACT
TATCGACATACGCTGCTTGATCNGCTTCNCTGCTTGNCTGNCNCGACTCTNGTACGNTGCATGANTGATGNGTNCNACGTATATCTGTATGTATTACGTG
TGATGCTGATTAGTATATTGATTGTCCATGCTNTGTATGTATGTCTGATACGTCCCTGNTCANCAGACTGTACTACTAAGCTACTCGATGNACTCTANCN
ANATGCTGCATACGTGCATGTGCTACTATANACGAAGTACTCTATCGCNTNACCGANGCTACACGTCANCGGGCTGANTGCGGANGTGTGTGATGCGTAC
NCNTNGGANCTAGATGCACTGTGTTTGAGCGACTACANCGNACTAGACGTATATATGTGACTGAAACTGAACTGATAGACGACGCNTNGCTGTATGATAT
CGANGTNAATAGATANGTGTGCANATAGTGATGTGTNCATGAATGCGATCGNTATACTGATGCAACTCGATNGACTGATCGACCCGTGCAGGAGAGTGGC
CGCAGNACTATACGACTCGNANATATGCAGANGCNCGATGCGACANCTGATCNANATNGAGTGAGCTGGCGAGC
>LE_HBa0198J21_T7_111441 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0198J21
Clone
Clone name
hba-198j21
LE_HBa0198J21
C03HBa0198J21
P198J21
Clone type
BAC
Contamination
none
Estimated length
20,849
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found