Clone Read LE_HBa0198K04_SP6_111454

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0198K04_SP6_111454
Primer
SP6
ID from Seq. Facility
LE_HBa_198_K04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
582 trimmed for vector and quality, 791 raw
Genbank Accession
DU096649
Sequence
>LE_HBa0198K04_SP6_111454 (raw untrimmed)
GTTTGCGTTTGTGAGTCAGCATAAGATGGAATCCACATGATGACTTGTTATCAAGGTTTATGAAGAAAAAAGAATCATACACGGATAAGTTTTTGCAACA
CGTGGCACTTAATTTCATCCTAGCTGGACGTGACACGTCATCGGTCGCGTTGAGTTGGTTTTTCTGGTTGGTCATTCAAAATCCAGTAGTTGAACAAAAA
ATCTTACAAGAAATATCCACGGTCTTGGTTGAGACACGTGGCAGTGACACGTCATCATGGCTCGAGGAGCCGTTAGCGTTCGAGGAGGTTGATCGGCTAA
CCTACTTGAAAGCTGCATTGTCGGAAACTCTCAGGCTCTATCCGTCTGTGCCGGAGGACTCGAAGCACGTGGTGGTCGATGACGTTTTGCCTGACGGGAC
ATTTGTACCCGCAGGTTCGTCGATAACATATTCTATATACTCAGCCGGAAGAATGAAGAGCACATGGGGAGAAGATTGTTTAGAATTCAAGCCAGAAAGA
TGGTTAACCCTAGACGGTAAAAAGTTTGTTATGCACGAACAATATAAGTTTGTGGCATTTAATGCTGGTCCAAGGATATGTCTAGGTAAAGACTTGGCAT
ACTTGCAAATGAAGTCGGCGCCTATGATCTACGTATCCCCCGTTAAGCTTCCACCATGTCCAGTTCCCGTTAACGTACAATAACCGTGTTTGTACCTTAT
CTTCCTCTTGCATGCTATTTCGTGCTTATTTATTTTTGTAATCTTTGTTTGTTTCATATGTTCTTACTACTTGATTATTTTTCATAACTTA
>LE_HBa0198K04_SP6_111454 (trimmed for quality and cloning vector)
CACATGATGACTTGTTATCAAGGTTTATGAAGAAAAAAGAATCATACACGGATAAGTTTTTGCAACACGTGGCACTTAATTTCATCCTAGCTGGACGTGA
CACGTCATCGGTCGCGTTGAGTTGGTTTTTCTGGTTGGTCATTCAAAATCCAGTAGTTGAACAAAAAATCTTACAAGAAATATCCACGGTCTTGGTTGAG
ACACGTGGCAGTGACACGTCATCATGGCTCGAGGAGCCGTTAGCGTTCGAGGAGGTTGATCGGCTAACCTACTTGAAAGCTGCATTGTCGGAAACTCTCA
GGCTCTATCCGTCTGTGCCGGAGGACTCGAAGCACGTGGTGGTCGATGACGTTTTGCCTGACGGGACATTTGTACCCGCAGGTTCGTCGATAACATATTC
TATATACTCAGCCGGAAGAATGAAGAGCACATGGGGAGAAGATTGTTTAGAATTCAAGCCAGAAAGATGGTTAACCCTAGACGGTAAAAAGTTTGTTATG
CACGAACAATATAAGTTTGTGGCATTTAATGCTGGTCCAAGGATATGTCTAGGTAAAGACTTGGCATACTTGCAAATGAAGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.980361
Expected error %
0.066558
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g00360.1 Score 330 E Value 3e-91 Identity 27.30% Align. Length 578bp (99.31%) Frame 1
68417.m00050 cytochrome P450, putative
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g45970.1 Score 323 E Value 5e-89 Identity 26.90% Align. Length 578bp (99.31%) Frame 1
68415.m05715 cytochrome P450, putative
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80794.1| Score 330 E Value 1e-89 Identity 27.30% Align. Length 578bp (99.31%) Frame 1
probable cytochrome P450 [Arabidopsis thaliana] ref|NP_191946.1| cytochrome P450, putative [Arabidopsis thaliana] gb|AAF02801.1| belongs to the cytochrome p450 family [Arabidopsis thaliana] sp|O23066|C86A2_ARATH Cytochrome P450 86A2 gb|AAB62843.1| belongs to the cytochrome p450 family [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM91369.1| Score 330 E Value 1e-89 Identity 27.30% Align. Length 578bp (99.31%) Frame 1
At4g00360/A_IG005I10_21 [Arabidopsis thaliana] gb|AAL75903.1| AT4g00360/A_IG005I10_21 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0198K04
Clone
Clone name
hba-198k4
LE_HBa0198K04
P198K04
Clone type
BAC
Contamination
none
Estimated length
102,130
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found